Factsheet for PGSC0003DMT400096244

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400038352

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01970.1	PGSC0003DMT400038352	AT3G03000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g055670.1.1	Tomato	cytosol	19.33	74.19
CDX98180	Canola	mitochondrion	36.97	48.62
Bra005657.1-P	Field mustard	mitochondrion	28.15	42.68
CDY11166	Canola	cytosol	23.53	35.44
Zm00001d010455_P013	Maize	plastid	55.46	35.29
AT5G01970.1	Thale cress	mitochondrion, nucleus	51.68	35.04
CDY63845	Canola	nucleus	51.26	34.86
CDX90224	Canola	nucleus	51.26	34.56
PGSC0003DMT400071236	Potato	nucleus, plastid	47.48	34.24
VIT_08s0056g00430.t01	Wine grape	nucleus	61.34	34.19
Bra010801.1-P	Field mustard	nucleus	51.68	32.8
AT1G30050.1	Thale cress	nucleus	52.94	32.39
PGSC0003DMT400071259	Potato	extracellular, golgi	26.05	31.96
CDX99879	Canola	mitochondrion	52.94	31.82
Bra032355.1-P	Field mustard	nucleus	52.52	31.49
CDY26298	Canola	nucleus	52.52	31.33
Os05t0315200-01	Rice	plasma membrane	55.04	31.26
GSMUA_Achr3P09690_001	Banana	mitochondrion	53.36	30.02
TraesCS1D01G124900.2	Wheat	nucleus	53.78	29.56
KRH09568	Soybean	nucleus	47.48	29.5
KRH64858	Soybean	nucleus	47.06	29.32
TraesCS1A01G128300.1	Wheat	cytosol, plastid	52.94	29.1
KRH40636	Soybean	nucleus	50.84	29.02
OQU77734	Sorghum	nucleus, plastid	35.29	28.67
KRH00520	Soybean	nucleus	49.58	27.83
TraesCS1B01G146700.2	Wheat	mitochondrion	52.94	27.45
GSMUA_Achr8P21430_001	Banana	mitochondrion	52.52	27.41
CDY11165	Canola	cytosol	1.68	21.05
PGSC0003DMT400037917	Potato	nucleus	26.47	18.92

Protein Annotations

EnsemblPlants:PGSC0003DMT400096244	EnsemblPlantsGene:PGSC0003DMG400045815	PANTHER:PTHR31016	PANTHER:PTHR31016:SF6	PGSC:PGSC0003DMG400045815	UniParc:UPI000295524A
UniProt:M1DY11	MapMan:20.2.4.4	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400045815]

Coordinates

chr9:-:38789138..38791165

Molecular Weight (calculated)

26887.4 Da

IEP (calculated)

8.489

GRAVY (calculated)

-0.400

Length

238 amino acids

Sequence
(BLAST)

001: MRMMMKEIRF VRQLLPLRLL IRASVAHRDS SSLSYFPQPA SLSSAGPGGF WGVLVSKAKA ILEGDDQQFQ SPTNQNQFYH NHNVVSTKMN NPILRKRLHA
101: LTSSLNHIGD AIGNALEVAM ATAAKGKLLL REVKTVKADV AFAKLRCCQL EEENKILRES CEKGDNPADD DMIRLQLETL LAEKGRLAHE NSVYARENRF
201: LREIVEYHQL TMQDHVVYLD EGIEQVSRMH STSPPTPH

Best Arabidopsis Sequence Match ( AT1G30050.1 )
(BLAST)

001: MAYRRRQGIT RASTFKEDIY HQPPDPDHGD LKGHSNGGSF RSSQSFSSHS SLAAQAIRAS SQAQGFTAYE DKSESRGFWG ILAQKAKSIL EDEEEQQQQQ
101: QQQNDVIFEP SNPTIRKSID KITTSLNHIG DSFEKAFEEG RTIVASQIRR KGSDLIDSDN NNYHQSSGSS SPWQPLTQPN PRESQLKASR DVAMATAAKA
201: KLLLRELKTV KADLAFAKER CSQLEEENKR LRDNRDKGNN NPADDDLIRL QLETLLAEKA RLAHENSIYA RENRFLREIV EYHQLTMQDV VYIDEGIEEV
301: AEVNPSITRT LSMASYSASE LPSISPSPSS PASPSRLSVS TDIYPILVQQ SSTNDITVES PKPVRPPSLG YTDDGKRPSS QLPSSQLSV

Arabidopsis Description

Tropomyosin [Source:UniProtKB/TrEMBL;Acc:Q9C8R6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.