Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G01970.1 | KRH25249 | AT3G03000.1 | 21798944 |
| AT5G01970.1 | KRH30413 | AT3G03000.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH40636 | Soybean | nucleus | 88.44 | 89.93 |
| Solyc09g055670.1.1 | Tomato | cytosol | 9.43 | 64.52 |
| CDX98180 | Canola | mitochondrion | 23.82 | 55.8 |
| AT5G01970.1 | Thale cress | mitochondrion, nucleus | 43.4 | 52.42 |
| Bra005657.1-P | Field mustard | mitochondrion | 18.4 | 49.68 |
| PGSC0003DMT400096244 | Potato | mitochondrion | 27.83 | 49.58 |
| Solyc10g074800.1.1 | Tomato | nucleus, plastid | 37.97 | 49.39 |
| PGSC0003DMT400071236 | Potato | nucleus, plastid | 37.97 | 48.79 |
| AT1G30050.1 | Thale cress | nucleus | 44.1 | 48.07 |
| CDX99879 | Canola | mitochondrion | 44.58 | 47.73 |
| KRH09568 | Soybean | nucleus | 42.92 | 47.52 |
| KRH64858 | Soybean | nucleus | 42.69 | 47.38 |
| CDY63845 | Canola | nucleus | 38.68 | 46.86 |
| VIT_08s0056g00430.t01 | Wine grape | nucleus | 47.17 | 46.84 |
| CDY26298 | Canola | nucleus | 43.87 | 46.62 |
| Bra032355.1-P | Field mustard | nucleus | 43.63 | 46.6 |
| CDX90224 | Canola | nucleus | 38.44 | 46.18 |
| Bra010801.1-P | Field mustard | nucleus | 40.8 | 46.13 |
| Zm00001d010455_P013 | Maize | plastid | 38.92 | 44.12 |
| KRH30689 | Soybean | nucleus | 41.27 | 41.08 |
| KRG98088 | Soybean | nucleus | 42.45 | 41.0 |
| Os05t0315200-01 | Rice | plasma membrane | 40.33 | 40.81 |
| CDY11166 | Canola | cytosol | 14.62 | 39.24 |
| PGSC0003DMT400071259 | Potato | extracellular, golgi | 17.92 | 39.18 |
| OQU77734 | Sorghum | nucleus, plastid | 26.42 | 38.23 |
| TraesCS1D01G124900.2 | Wheat | nucleus | 38.92 | 38.11 |
| GSMUA_Achr3P09690_001 | Banana | mitochondrion | 37.97 | 38.06 |
| TraesCS1A01G128300.1 | Wheat | cytosol, plastid | 37.74 | 36.95 |
| CDY11165 | Canola | cytosol | 1.65 | 36.84 |
| TraesCS1B01G146700.2 | Wheat | mitochondrion | 38.92 | 35.95 |
| GSMUA_Achr8P21430_001 | Banana | mitochondrion | 38.21 | 35.53 |
| KRH67202 | Soybean | nucleus, plastid | 18.87 | 24.32 |
| KRG95525 | Soybean | nucleus, plastid | 19.1 | 23.82 |
Protein Annotations
| EMBL:ACUP02011452 | EnsemblPlants:KRH00520 | EnsemblPlantsGene:GLYMA_18G218000 | EntrezGene:100819083 | ncoils:Coil | PANTHER:PTHR31016 |
| PANTHER:PTHR31016:SF6 | ProteinID:KRH00520 | ProteinID:KRH00520.1 | SEG:seg | UniParc:UPI000233DFC7 | UniProt:I1N3C4 |
| MapMan:20.2.4.4 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr18:-:50506857..50512742
Molecular Weight (calculated)
47109.4 Da
IEP (calculated)
6.115
GRAVY (calculated)
-0.851
Length
424 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYRRRQGIS RSSTFKEEFH DPSLEDVHVK DSNHDNASPS IFSSSSSTPA SSLAAQAIKA TASRHQPSLS FAFAPAESDH QRSKSFEAYG NGNSKSGFWG
101: VIAQKAKSIL DDDKPTPQHD TMPQTQTLKS HSFNTFSGPS AAQNSPSQFK PVYESLDSSR KMDNPKFRKG LDKITTSLNQ LGDTFEKAFE EGRTIMESKK
201: ADLRTQIRRK GNNSGDTNLT SDMRNPLQEA TQTQNQSSHE TKLKASRDVA MATAAKAKLL LRELKSVKAD LAFAKARCTQ LEEENKVLRD REGSDKGQNR
301: EDDDLIRHQL ETLLAEKARL ASENETYSRE NRFLREIVEY HQLTMQDVVY IDEGMGEVSE VYPVDDSGIT RLLSVSPHSS DEDVLVSPSP PMLSKEIFTV
401: PEEDSKSISE DDAPSAVSVS PHTK
101: VIAQKAKSIL DDDKPTPQHD TMPQTQTLKS HSFNTFSGPS AAQNSPSQFK PVYESLDSSR KMDNPKFRKG LDKITTSLNQ LGDTFEKAFE EGRTIMESKK
201: ADLRTQIRRK GNNSGDTNLT SDMRNPLQEA TQTQNQSSHE TKLKASRDVA MATAAKAKLL LRELKSVKAD LAFAKARCTQ LEEENKVLRD REGSDKGQNR
301: EDDDLIRHQL ETLLAEKARL ASENETYSRE NRFLREIVEY HQLTMQDVVY IDEGMGEVSE VYPVDDSGIT RLLSVSPHSS DEDVLVSPSP PMLSKEIFTV
401: PEEDSKSISE DDAPSAVSVS PHTK
001: MAYRRRQGIG KFATFKEEVD RLPPESITAV KDRSPPARSS PAFDQPRSKN FTTEPKGLWG VIAQKAKSVI EDDKSSDRST TASQSRFSYL SDEGFKKMDN
101: PKLRRGLDKL TSSLNQIGDT FEKAFEDGRT LVENKTADII QETRKLQTRR RGTGGEDENQ NQSYGVSSSW KKSPEQPMQL NHIEHETQLK ASRDVAMATA
201: AKAKLLLREL KTVKADLAFA KERCAQLEEE NKHLRESHRE KGSNPADEDL IRLQLESLLA EKARLAHENS VYARENRFLR EIVEYHQLTM QDVVYIDEGS
301: EEVTQVSPFV STLMTSSPAD RSQSPPSQEM IKEMLVVAEE SSVCASVVSV S
101: PKLRRGLDKL TSSLNQIGDT FEKAFEDGRT LVENKTADII QETRKLQTRR RGTGGEDENQ NQSYGVSSSW KKSPEQPMQL NHIEHETQLK ASRDVAMATA
201: AKAKLLLREL KTVKADLAFA KERCAQLEEE NKHLRESHRE KGSNPADEDL IRLQLESLLA EKARLAHENS VYARENRFLR EIVEYHQLTM QDVVYIDEGS
301: EEVTQVSPFV STLMTSSPAD RSQSPPSQEM IKEMLVVAEE SSVCASVVSV S
Arabidopsis Description
Heat-inducible transcription repressor [Source:UniProtKB/TrEMBL;Acc:Q9LZN4]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.