CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26298	Canola	nucleus	88.89	88.22
AT1G30050.1	Thale cress	nucleus	73.74	75.06
CDX90224	Canola	nucleus	63.38	71.1
Solyc09g055670.1.1	Tomato	cytosol	11.11	70.97
CDY63845	Canola	nucleus	62.63	70.86
CDX98180	Canola	mitochondrion	30.05	65.75
PGSC0003DMT400096244	Potato	mitochondrion	31.82	52.94
Solyc10g074800.1.1	Tomato	nucleus, plastid	41.41	50.31
PGSC0003DMT400071236	Potato	nucleus, plastid	41.92	50.3
CDY29667	Canola	cytosol	14.39	49.14
KRH40636	Soybean	nucleus	47.73	45.32
VIT_08s0056g00430.t01	Wine grape	nucleus	48.48	44.96
KRH00520	Soybean	nucleus	47.73	44.58
CDY23991	Canola	plastid	36.11	44.55
CDX84826	Canola	plastid	36.62	42.9
Zm00001d010455_P013	Maize	plastid	39.9	42.25
KRH64858	Soybean	nucleus	39.39	40.84
PGSC0003DMT400071259	Potato	extracellular, golgi	19.44	39.69
Os05t0315200-01	Rice	plasma membrane	41.41	39.14
CDY11166	Canola	cytosol	15.15	37.97
KRH09568	Soybean	nucleus	36.62	37.86
TraesCS1D01G124900.2	Wheat	nucleus	40.4	36.95
GSMUA_Achr3P09690_001	Banana	mitochondrion	39.39	36.88
TraesCS1A01G128300.1	Wheat	cytosol, plastid	39.65	36.26
GSMUA_Achr8P21430_001	Banana	mitochondrion	40.91	35.53
TraesCS1B01G146700.2	Wheat	mitochondrion	40.4	34.86
OQU77734	Sorghum	nucleus, plastid	25.76	34.81
CDY11165	Canola	cytosol	1.26	26.32
CDX90923	Canola	nucleus, plastid	19.44	23.55
CDY17988	Canola	nucleus	19.44	22.85

Protein Annotations

EnsemblPlants:CDX99879	EnsemblPlantsGene:GSBRNA2T00108629001	ncoils:Coil	PANTHER:PTHR31016	PANTHER:PTHR31016:SF6	ProteinID:CDX99879
ProteinID:CDX99879.1	SEG:seg	UniParc:UPI0004EB77CA	MapMan:20.2.4.4	:	:

Description

BnaC05g23010D

Coordinates

chrLK031914:+:860471..861733

Molecular Weight (calculated)

43732.5 Da

IEP (calculated)

5.704

GRAVY (calculated)

-0.746

Length

396 amino acids

Sequence
(BLAST)

001: MAYRRRQGVT RASTFNDDIY HQTPDHDYGD LKGHSNGKSS FRSSQSFSSH SSLAAQAIRA SSSLNPNSNS QVRGFTAYED AAKSESRGFW GILAQKAKSI
101: LEDEEEEQQN VVVSEPSSNN SNPTIRKSID KITTSLNQIG DSFEKAFEEG RTMVASQIRR KGSDLMDIPE NHNQSSGSSS PWQPLTQPNP HESQLKASRD
201: VAMATAAKAK LLLRELKTVK ADQAFAKQRC SQLEEENKRL RDNREKGTNN PADDDLIRLQ LETLLAEKAR LAHENSIYAR ENRFLREIVE YHQLTMQDVV
301: YIDEGIEEVA EVNPSITRTL SMASFAASEF PVNSSSPLSP SSPSRLSVST DVYPVLVQQS SASDVGGSAD ESPRPVRPPS LGYTDDGKIS LSQMSV

Best Arabidopsis Sequence Match ( AT1G30050.1 )
(BLAST)

001: MAYRRRQGIT RASTFKEDIY HQPPDPDHGD LKGHSNGGSF RSSQSFSSHS SLAAQAIRAS SQAQGFTAYE DKSESRGFWG ILAQKAKSIL EDEEEQQQQQ
101: QQQNDVIFEP SNPTIRKSID KITTSLNHIG DSFEKAFEEG RTIVASQIRR KGSDLIDSDN NNYHQSSGSS SPWQPLTQPN PRESQLKASR DVAMATAAKA
201: KLLLRELKTV KADLAFAKER CSQLEEENKR LRDNRDKGNN NPADDDLIRL QLETLLAEKA RLAHENSIYA RENRFLREIV EYHQLTMQDV VYIDEGIEEV
301: AEVNPSITRT LSMASYSASE LPSISPSPSS PASPSRLSVS TDIYPILVQQ SSTNDITVES PKPVRPPSLG YTDDGKRPSS QLPSSQLSV

Arabidopsis Description

Tropomyosin [Source:UniProtKB/TrEMBL;Acc:Q9C8R6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.