CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

plastid 5
endoplasmic reticulum 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03466
KRH54542
KRH56919
KRH63357

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54320.1	KRH03466	AT3G47620.1	21798944
AT1G54320.1	KRH54542	AT3G47620.1	21798944
AT1G54320.1	KRH56919	AT3G47620.1	21798944
AT1G54320.1	KRH63357	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43674	Soybean	plasma membrane, plastid	95.06	95.06
KRH13042	Soybean	plasma membrane	81.1	81.1
KRH44838	Soybean	plasma membrane, plastid	78.78	78.78
CDY42411	Canola	plastid	75.0	74.35
CDY10503	Canola	plastid	74.42	73.78
GSMUA_Achr11P...	Banana	plasma membrane, plastid	75.0	73.5
AT1G54320.1	Thale cress	plastid	74.13	73.07
GSMUA_Achr6P20180_001	Banana	plastid	74.13	72.65
AT3G12740.1	Thale cress	plastid	73.26	72.0
Solyc05g054800.1.1	Tomato	nucleus	72.38	71.14
CDY08407	Canola	plasma membrane, plastid	70.93	71.14
Bra030808.1-P	Field mustard	plastid	74.42	70.91
Bra034736.1-P	Field mustard	plasma membrane, plastid	70.64	70.85
Bra001467.1-P	Field mustard	plastid	71.51	70.49
CDY42174	Canola	plastid	71.51	70.29
Os02t0173800-01	Rice	plasma membrane	70.64	69.43
TraesCS6D01G145600.2	Wheat	plasma membrane, plastid	70.06	69.25
TraesCS6B01G183800.1	Wheat	plasma membrane, plastid	70.06	69.25
TraesCS6A01G155600.1	Wheat	plasma membrane, plastid	69.77	68.97
EER88783	Sorghum	plasma membrane, plastid	70.06	68.47
AT1G79450.1	Thale cress	plasma membrane	69.48	68.29
Zm00001d036654_P002	Maize	endoplasmic reticulum, golgi, plasma membrane, plastid	68.9	67.91
CDX79320	Canola	plasma membrane	67.15	67.74
TraesCS7B01G384400.1	Wheat	plasma membrane	68.9	67.52
TraesCS7D01G469100.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane, plastid	69.19	67.42
TraesCS7A01G482200.1	Wheat	plasma membrane	68.6	67.24
CDX67738	Canola	endoplasmic reticulum, extracellular, peroxisome	36.34	67.2
CDX67994	Canola	plasma membrane	65.99	66.37
AT1G16360.2	Thale cress	plastid	67.44	66.29
EES06351	Sorghum	plastid	67.15	66.19
Bra003610.1-P	Field mustard	plasma membrane	65.7	66.08
HORVU6Hr1G031530.3	Barley	plastid	67.44	65.91
Zm00001d015401_P001	Maize	plastid	66.57	65.62
Zm00001d053778_P001	Maize	plasma membrane	66.28	65.33
CDX81761	Canola	plastid	66.28	65.14
CDY51005	Canola	plastid	66.28	65.14
Os06t0665000-01	Rice	plasma membrane	67.73	65.08
KRH09908	Soybean	plasma membrane	61.05	61.05
HORVU0Hr1G022300.1	Barley	endoplasmic reticulum	69.48	60.2
VIT_19s0085g00850.t01	Wine grape	plastid	73.55	59.81
KRG94866	Soybean	plasma membrane	57.85	57.02
KRH37801	Soybean	endoplasmic reticulum, golgi, plasma membrane, plastid	57.27	56.61
KRH12833	Soybean	cytosol	39.24	53.15
Zm00001d046948_P004	Maize	plasma membrane	64.53	52.86
KRH23423	Soybean	plasma membrane	55.23	49.87
KRH06673	Soybean	endoplasmic reticulum, golgi, plasma membrane	48.84	47.46
PGSC0003DMT400060190	Potato	plasma membrane	73.55	42.45
CDY00796	Canola	plastid	72.38	39.27
CDX73805	Canola	plastid	71.51	38.62
KRH12834	Soybean	plasma membrane	10.17	35.0
Bra026722.1-P	Field mustard	cytosol, golgi, plasma membrane	65.12	32.89

Protein Annotations

EMBL:ACUP02009787	EnsemblPlants:KRH13775	EnsemblPlantsGene:GLYMA_15G263400	EntrezGene:100806200	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:CDC50/LEM3_fam	PANTHER:PTHR10926	PANTHER:PTHR10926:SF45	PFAM:PF03381	PIRSF:PIRSF015840
ProteinID:KRH13775	ProteinID:KRH13775.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI000233BE74	UniProt:I1MJE0
MapMan:5.8.2.1.1.2	MapMan:24.1.2.4.1.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:49649271..49658032

Molecular Weight (calculated)

38539.0 Da

IEP (calculated)

9.935

GRAVY (calculated)

-0.324

Length

344 amino acids

Sequence
(BLAST)

001: MASSSATGAG STDPTAARRN TKRPKYSKFT QQELPACKPI LTPRAVISAF LLVSIVFVPI GVASLIASRK VVEIVFRYES TCIPHEVTDK VAYIQSPADK
101: TCKISLPVDK HMKSPIYVYY QLDNFYQNHR RYVKSRSDEQ LRDRREENST SACNPEDIAN GKAIVPCGLI AWSLFNDTYS FSRDNKNLTV NKNGISWKSD
201: REHKFGKDVF PKNFQSSAIR GGASLNESIP LSKQEDLIVW MRTAALPTFR KLYGKIEVDL NAGDQINVTL QNNYNTYSFN GKKKLVLSTT SWLGGKNDFL
301: GIAYLTVGGL CFFLALAFTV VYFVKPRQLG DPSYLSWNRN PGGH

Best Arabidopsis Sequence Match ( AT3G12740.1 )
(BLAST)

001: MSSSNTPSSS AAAAGSIDSS AARRNSKRPK YSKFTQQELP ACKPILTPGW VISTFLIISV IFIPLGVISL FASQDVVEIV DRYDSACIPL SDRANKVAYI
101: QGTGNKSCTR TLIVPKRMKQ PIYVYYQLEN FYQNHRRYVK SRSDSQLRSV KDENQIDACK PEDDFGGQPI VPCGLIAWSL FNDTYVLSRN NQGLTVNKKG
201: IAWKSDKEHK FGKNVFPKNF QKGNLTGGAS LDPNKPLSDQ EDLIVWMRTA ALPTFRKLYG KIESDLEKGE NIQVTLQNNY NTYSFSGKKK LVLSTTSWLG
301: GKNDFLGIAY LTVGGICFVL ALAFTVMYLV KPRRLGDPTY LSWNRIPGGR

Arabidopsis Description

ALIS1ALA-interacting subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTW0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.