Factsheet for AT1G16360.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
golgi 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX81761	Canola	plastid	93.71	93.71
CDY51005	Canola	plastid	93.43	93.43
AT1G79450.1	Thale cress	plasma membrane	83.43	83.43
AT1G54320.1	Thale cress	plastid	73.14	73.35
AT3G12740.1	Thale cress	plastid	73.14	73.14
GSMUA_Achr6P20180_001	Banana	plastid	68.0	67.81
KRH13042	Soybean	plasma membrane	66.57	67.73
KRH13775	Soybean	plasma membrane, plastid	66.29	67.44
KRH44838	Soybean	plasma membrane, plastid	65.71	66.86
KRH43674	Soybean	plasma membrane, plastid	65.43	66.57
GSMUA_Achr11P...	Banana	plasma membrane, plastid	66.29	66.1
TraesCS7B01G384400.1	Wheat	plasma membrane	65.71	65.53
TraesCS7A01G482200.1	Wheat	plasma membrane	65.71	65.53
TraesCS7D01G469100.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane, plastid	66.0	65.44
Solyc05g054800.1.1	Tomato	nucleus	64.86	64.86
TraesCS6D01G145600.2	Wheat	plasma membrane, plastid	63.71	64.08
TraesCS6A01G155600.1	Wheat	plasma membrane, plastid	63.43	63.79
TraesCS6B01G183800.1	Wheat	plasma membrane, plastid	63.43	63.79
Os02t0173800-01	Rice	plasma membrane	63.71	63.71
Os06t0665000-01	Rice	plasma membrane	64.86	63.41
Zm00001d036654_P002	Maize	endoplasmic reticulum, golgi, plasma membrane, plastid	63.14	63.32
Zm00001d015401_P001	Maize	plastid	63.14	63.32
EES06351	Sorghum	plastid	62.86	63.04
EER88783	Sorghum	plasma membrane, plastid	62.86	62.5
Zm00001d053778_P001	Maize	plasma membrane	62.0	62.18
HORVU6Hr1G031530.3	Barley	plastid	60.86	60.51
HORVU0Hr1G022300.1	Barley	endoplasmic reticulum	66.0	58.19
VIT_19s0085g00850.t01	Wine grape	plastid	68.57	56.74
AT5G46150.1	Thale cress	golgi, peroxisome, plasma membrane	54.0	55.1
Zm00001d046948_P004	Maize	plasma membrane	60.0	50.0
Bra026722.1-P	Field mustard	cytosol, golgi, plasma membrane	87.71	45.08
PGSC0003DMT400060190	Potato	plasma membrane	68.57	40.27

Protein Annotations

MapMan:24.1.2.4.1.2	MapMan:5.8.2.1.1.2	EntrezGene:838205	UniProt:A0A1P8AN78	ProteinID:ANM58102.1	ArrayExpress:AT1G16360
EnsemblPlantsGene:AT1G16360	RefSeq:AT1G16360	TAIR:AT1G16360	RefSeq:AT1G16360-TAIR-G	EnsemblPlants:AT1G16360.2	Unigene:At.41886
InterPro:CDC50/LEM3_fam	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	RefSeq:NP_001320562.1	PFAM:PF03381
PIRSF:PIRSF015840	PANTHER:PTHR10926	PANTHER:PTHR10926:SF28	TMHMM:TMhelix	UniParc:UPI0001CAA4A6	SEG:seg

Description

LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Source:TAIR;Acc:AT1G16360]

Coordinates

chr1:-:5593270..5595814

Molecular Weight (calculated)

39286.1 Da

IEP (calculated)

9.832

GRAVY (calculated)

-0.360

Length

350 amino acids

Sequence
(BLAST)

001: MSFSATSSIA LGGGSAEASA AKNTSKRPKY SRFTQQELPA CKPILTPKWV ILTFLVSGVV FIPLGVICLF ASQGVIEIVD RYDTDCIPLS SRDNKVRYIQ
101: GLEDKRCNRT ITVTKTMKNP VYVYYQLENY YQNHRRYVKS RQDGQLRSPK DEHETKSCAP EDTLGGQPIV PCGLVAWSLF NDTYDFTRNN QKLPVNKKDI
201: SWKSDRESKF GKNVFPKNFQ KGSLIGGKSL DQDIPLSEQE DLIVWMRTAA LPTFRKLYGK IDTDLQAGDT IKVLLQNNYN TYSFNGKKKL VLSTTSWLGG
301: RNDFLGIAYL TVGSICLFLA VSFSVLYLAK PRQLGDPSYL SWNRSAGGGR

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.