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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • endoplasmic reticulum 2
  • plasma membrane 3
  • extracellular 1
  • golgi 1
  • vacuole 1
  • plastid 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, plastid, secretory
BaCelLo:nucleus
MultiLoc:endoplasmic reticulum
Plant-mPloc:plasma membrane
PProwler:secretory
TargetP:plastid
WoLF PSORT:plasma membrane
YLoc:plastid
 plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os02t0747400-01
Os06t0226700-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G54320.1 Os02t0747400-01 AT3G47620.1 21798944
AT1G54320.1 Os06t0226700-01 AT3G47620.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6B01G183800.1 Wheat plasma membrane, plastid 82.86 83.33
TraesCS6D01G145600.2 Wheat plasma membrane, plastid 82.57 83.05
TraesCS6A01G155600.1 Wheat plasma membrane, plastid 82.0 82.47
Zm00001d053778_P001 Maize plasma membrane 79.43 79.66
Zm00001d015401_P001 Maize plastid 79.43 79.66
EES06351 Sorghum plastid 78.86 79.08
HORVU6Hr1G031530.3 Barley plastid 77.71 77.27
Os06t0665000-01 Rice plasma membrane 77.71 75.98
GSMUA_Achr11P... Banana plasma membrane, plastid 74.86 74.64
GSMUA_Achr6P20180_001 Banana plastid 74.0 73.79
KRH43674 Soybean plasma membrane, plastid 70.0 71.22
KRH13775 Soybean plasma membrane, plastid 69.43 70.64
KRH13042 Soybean plasma membrane 69.43 70.64
CDY10503 Canola plastid 70.0 70.61
CDY42411 Canola plastid 69.71 70.32
KRH44838 Soybean plasma membrane, plastid 68.57 69.77
AT1G54320.1 Thale cress plastid 68.86 69.05
CDY08407 Canola plasma membrane, plastid 67.14 68.51
AT3G12740.1 Thale cress plastid 68.29 68.29
Bra034736.1-P Field mustard plasma membrane, plastid 66.86 68.22
CDY42174 Canola plastid 67.71 67.71
Solyc05g054800.1.1 Tomato nucleus 67.43 67.43
Bra030808.1-P Field mustard plastid 69.14 67.04
Bra001467.1-P Field mustard plastid 66.29 66.48
CDX79320 Canola plasma membrane 64.0 65.69
CDX67994 Canola plasma membrane 62.86 64.33
Bra003610.1-P Field mustard plasma membrane 62.57 64.04
AT1G79450.1 Thale cress plasma membrane 64.0 64.0
AT1G16360.2 Thale cress plastid 63.71 63.71
CDY51005 Canola plastid 62.29 62.29
CDX81761 Canola plastid 62.29 62.29
CDX67738 Canola endoplasmic reticulum, extracellular, peroxisome 32.86 61.83
Os03t0120100-01 Rice plasma membrane 59.43 61.18
Os09t0560600-01 Rice plasma membrane 60.57 60.4
Os03t0785500-01 Rice plasma membrane 58.29 58.12
Os05t0529900-00 Rice plasma membrane 56.0 56.98
VIT_19s0085g00850.t01 Wine grape plastid 68.0 56.26
PGSC0003DMT400060190 Potato plasma membrane 68.86 40.44
CDY00796 Canola plastid 66.86 36.91
CDX73805 Canola plastid 66.29 36.42
Bra026722.1-P Field mustard cytosol, golgi, plasma membrane 61.71 31.72
Os09t0560700-01 Rice cytosol, peroxisome, plastid 1.71 1.85
Protein Annotations
MapMan:24.1.2.4.1.2EntrezGene:4328458MapMan:5.8.2.1.1.2ProteinID:BAD26188.1ProteinID:BAF07957.1ProteinID:BAS77225.1
InterPro:CDC50/LEM3_famGO:GO:0005575GO:GO:0016020GO:GO:0016021EnsemblPlantsGene:Os02g0173800EnsemblPlants:Os02t0173800-01
PFAM:PF03381PIRSF:PIRSF015840PANTHER:PTHR10926PANTHER:PTHR10926:SF30UniProt:Q6H511TMHMM:TMhelix
UniParc:UPI00003B464DRefSeq:XP_015626490.1SEG:seg:::
Description
Protein of unknown function DUF284, transmembrane eukaryotic family protein. (Os02t0173800-01)
Coordinates
chr2:-:4038445..4042357
Molecular Weight (calculated)
39115.0 Da
IEP (calculated)
10.287
GRAVY (calculated)
-0.409
Length
350 amino acids
Sequence
(BLAST)
001: MSSGQEAGSS SGGSGDGGAA APRRNTRKPK YSKFTQQELP ACKPILTPKW VISVFVLVGV IFVPIGLVSL KASRKVVEIV DRYDDACVPA NTTDKLAYIQ
101: NPTISKNCRR TLKVPKDMDA PIFVYYQLDN FYQNHRRYVK SRSDAQLRDP KKANDTSTCD PEGTANGMAI VPCGLIAWSI FNDTYGFVRN SKNLPVDKKN
201: ISWKSDREHK FGRDVFPKNF QNGSLIGGKT LDPNKSLSKQ EDLIVWMRTA ALPTFRKLYG RIHTDLKKGD TITVTLENNY NTYSFSGKKK LVLSTSTWLG
301: GKNDFLGLAY LSVGGLCFFL AFAFTLLYLI KPRKMGDNNY LSWNRNPAGR
Best Arabidopsis Sequence Match ( AT3G12740.1 )
(BLAST)
001: MSSSNTPSSS AAAAGSIDSS AARRNSKRPK YSKFTQQELP ACKPILTPGW VISTFLIISV IFIPLGVISL FASQDVVEIV DRYDSACIPL SDRANKVAYI
101: QGTGNKSCTR TLIVPKRMKQ PIYVYYQLEN FYQNHRRYVK SRSDSQLRSV KDENQIDACK PEDDFGGQPI VPCGLIAWSL FNDTYVLSRN NQGLTVNKKG
201: IAWKSDKEHK FGKNVFPKNF QKGNLTGGAS LDPNKPLSDQ EDLIVWMRTA ALPTFRKLYG KIESDLEKGE NIQVTLQNNY NTYSFSGKKK LVLSTTSWLG
301: GKNDFLGIAY LTVGGICFVL ALAFTVMYLV KPRRLGDPTY LSWNRIPGGR
Arabidopsis Description
ALIS1ALA-interacting subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTW0]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.