Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G54320.1 | Thale cress | plastid | 87.14 | 87.39 |
| Bra034736.1-P | Field mustard | plasma membrane, plastid | 84.57 | 86.3 |
| CDY08407 | Canola | plasma membrane, plastid | 84.29 | 86.01 |
| CDY42174 | Canola | plastid | 86.0 | 86.0 |
| Bra001467.1-P | Field mustard | plastid | 84.0 | 84.24 |
| KRH43674 | Soybean | plasma membrane, plastid | 72.57 | 73.84 |
| KRH13775 | Soybean | plasma membrane, plastid | 72.0 | 73.26 |
| AT1G16360.2 | Thale cress | plastid | 73.14 | 73.14 |
| AT1G79450.1 | Thale cress | plasma membrane | 72.86 | 72.86 |
| KRH44838 | Soybean | plasma membrane, plastid | 70.86 | 72.09 |
| GSMUA_Achr6P20180_001 | Banana | plastid | 72.0 | 71.79 |
| KRH13042 | Soybean | plasma membrane | 70.29 | 71.51 |
| GSMUA_Achr11P... | Banana | plasma membrane, plastid | 70.29 | 70.09 |
| Solyc05g054800.1.1 | Tomato | nucleus | 69.14 | 69.14 |
| Os02t0173800-01 | Rice | plasma membrane | 68.29 | 68.29 |
| Zm00001d036654_P002 | Maize | endoplasmic reticulum, golgi, plasma membrane, plastid | 67.14 | 67.34 |
| Zm00001d015401_P001 | Maize | plastid | 66.86 | 67.05 |
| Os06t0665000-01 | Rice | plasma membrane | 67.71 | 66.2 |
| EER88783 | Sorghum | plasma membrane, plastid | 66.57 | 66.19 |
| TraesCS6D01G145600.2 | Wheat | plasma membrane, plastid | 65.71 | 66.09 |
| TraesCS6B01G183800.1 | Wheat | plasma membrane, plastid | 65.71 | 66.09 |
| TraesCS7A01G482200.1 | Wheat | plasma membrane | 66.0 | 65.81 |
| TraesCS7B01G384400.1 | Wheat | plasma membrane | 66.0 | 65.81 |
| TraesCS6A01G155600.1 | Wheat | plasma membrane, plastid | 65.43 | 65.8 |
| Zm00001d053778_P001 | Maize | plasma membrane | 65.43 | 65.62 |
| TraesCS7D01G469100.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 66.0 | 65.44 |
| EES06351 | Sorghum | plastid | 65.14 | 65.33 |
| HORVU6Hr1G031530.3 | Barley | plastid | 62.57 | 62.22 |
| VIT_19s0085g00850.t01 | Wine grape | plastid | 72.86 | 60.28 |
| HORVU0Hr1G022300.1 | Barley | endoplasmic reticulum | 67.14 | 59.19 |
| AT5G46150.1 | Thale cress | golgi, peroxisome, plasma membrane | 54.86 | 55.98 |
| Zm00001d046948_P004 | Maize | plasma membrane | 62.86 | 52.38 |
| CDY00796 | Canola | plastid | 84.0 | 46.37 |
| CDX73805 | Canola | plastid | 84.0 | 46.15 |
| PGSC0003DMT400060190 | Potato | plasma membrane | 70.86 | 41.61 |
Protein Annotations
| MapMan:24.1.2.4.1.2 | MapMan:5.8.2.1.1.2 | EntrezGene:820456 | UniProt:A0A178VCJ4 | ProteinID:AEE75241.1 | EMBL:AF410309 |
| Symbol:ALIS1 | ArrayExpress:AT3G12740 | EnsemblPlantsGene:AT3G12740 | RefSeq:AT3G12740 | TAIR:AT3G12740 | RefSeq:AT3G12740-TAIR-G |
| EnsemblPlants:AT3G12740.1 | TAIR:AT3G12740.1 | EMBL:AY045904 | EMBL:AY087607 | EMBL:AY091210 | ProteinID:BAB02418.1 |
| InterPro:CDC50/LEM3_fam | GO:GO:0000139 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005768 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0005794 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0015914 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0031902 | RefSeq:NP_566435.1 | ProteinID:OAP03646.1 |
| PFAM:PF03381 | PIRSF:PIRSF015840 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR10926 | PANTHER:PTHR10926:SF45 | UniProt:Q9LTW0 | TMHMM:TMhelix |
| UniParc:UPI00000A6486 | SEG:seg | : | : | : | : |
Description
ALIS1ALA-interacting subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTW0]
Coordinates
chr3:+:4049309..4051775
Molecular Weight (calculated)
39070.9 Da
IEP (calculated)
10.041
GRAVY (calculated)
-0.318
Length
350 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSNTPSSS AAAAGSIDSS AARRNSKRPK YSKFTQQELP ACKPILTPGW VISTFLIISV IFIPLGVISL FASQDVVEIV DRYDSACIPL SDRANKVAYI
101: QGTGNKSCTR TLIVPKRMKQ PIYVYYQLEN FYQNHRRYVK SRSDSQLRSV KDENQIDACK PEDDFGGQPI VPCGLIAWSL FNDTYVLSRN NQGLTVNKKG
201: IAWKSDKEHK FGKNVFPKNF QKGNLTGGAS LDPNKPLSDQ EDLIVWMRTA ALPTFRKLYG KIESDLEKGE NIQVTLQNNY NTYSFSGKKK LVLSTTSWLG
301: GKNDFLGIAY LTVGGICFVL ALAFTVMYLV KPRRLGDPTY LSWNRIPGGR
101: QGTGNKSCTR TLIVPKRMKQ PIYVYYQLEN FYQNHRRYVK SRSDSQLRSV KDENQIDACK PEDDFGGQPI VPCGLIAWSL FNDTYVLSRN NQGLTVNKKG
201: IAWKSDKEHK FGKNVFPKNF QKGNLTGGAS LDPNKPLSDQ EDLIVWMRTA ALPTFRKLYG KIESDLEKGE NIQVTLQNNY NTYSFSGKKK LVLSTTSWLG
301: GKNDFLGIAY LTVGGICFVL ALAFTVMYLV KPRRLGDPTY LSWNRIPGGR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.