Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034736.1-P | Field mustard | plasma membrane, plastid | 99.71 | 99.71 |
| CDY42174 | Canola | plastid | 99.13 | 97.14 |
| CDY42411 | Canola | plastid | 85.42 | 84.44 |
| AT3G12740.1 | Thale cress | plastid | 86.01 | 84.29 |
| CDY10503 | Canola | plastid | 83.97 | 83.0 |
| CDX79320 | Canola | plasma membrane | 72.89 | 73.31 |
| CDX67994 | Canola | plasma membrane | 72.3 | 72.51 |
| KRH43674 | Soybean | plasma membrane, plastid | 72.01 | 71.8 |
| CDX81761 | Canola | plastid | 72.59 | 71.14 |
| CDX67738 | Canola | endoplasmic reticulum, extracellular, peroxisome | 38.48 | 70.97 |
| KRH13775 | Soybean | plasma membrane, plastid | 71.14 | 70.93 |
| CDY51005 | Canola | plastid | 72.3 | 70.86 |
| GSMUA_Achr6P20180_001 | Banana | plastid | 72.3 | 70.66 |
| KRH44838 | Soybean | plasma membrane, plastid | 70.55 | 70.35 |
| Solyc05g054800.1.1 | Tomato | nucleus | 71.72 | 70.29 |
| KRH13042 | Soybean | plasma membrane | 70.26 | 70.06 |
| Os02t0173800-01 | Rice | plasma membrane | 68.51 | 67.14 |
| GSMUA_Achr11P... | Banana | plasma membrane, plastid | 68.51 | 66.95 |
| TraesCS6D01G145600.2 | Wheat | plasma membrane, plastid | 67.06 | 66.09 |
| TraesCS6B01G183800.1 | Wheat | plasma membrane, plastid | 67.06 | 66.09 |
| TraesCS6A01G155600.1 | Wheat | plasma membrane, plastid | 66.76 | 65.8 |
| Zm00001d036654_P002 | Maize | endoplasmic reticulum, golgi, plasma membrane, plastid | 66.18 | 65.04 |
| Zm00001d053778_P001 | Maize | plasma membrane | 65.89 | 64.76 |
| Zm00001d015401_P001 | Maize | plastid | 65.89 | 64.76 |
| EES06351 | Sorghum | plastid | 65.89 | 64.76 |
| Os06t0665000-01 | Rice | plasma membrane | 67.06 | 64.25 |
| TraesCS7A01G482200.1 | Wheat | plasma membrane | 65.6 | 64.1 |
| TraesCS7B01G384400.1 | Wheat | plasma membrane | 65.6 | 64.1 |
| EER88783 | Sorghum | plasma membrane, plastid | 65.6 | 63.92 |
| TraesCS7D01G469100.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 65.6 | 63.74 |
| HORVU6Hr1G031530.3 | Barley | plastid | 63.56 | 61.93 |
| HORVU0Hr1G022300.1 | Barley | endoplasmic reticulum | 66.76 | 57.68 |
| VIT_19s0085g00850.t01 | Wine grape | plastid | 70.85 | 57.45 |
| CDY35146 | Canola | plasma membrane | 53.94 | 54.09 |
| CDY03242 | Canola | golgi, peroxisome, plasma membrane, plastid | 53.35 | 53.51 |
| Zm00001d046948_P004 | Maize | plasma membrane | 62.68 | 51.19 |
| CDX77634 | Canola | golgi | 16.62 | 50.44 |
| CDY00796 | Canola | plastid | 89.21 | 48.27 |
| CDX73805 | Canola | plastid | 89.5 | 48.19 |
| PGSC0003DMT400060190 | Potato | plasma membrane | 72.89 | 41.95 |
Protein Annotations
| EnsemblPlants:CDY08407 | EnsemblPlantsGene:GSBRNA2T00000161001 | GO:A0A078F5N6 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:CDC50/LEM3_fam | PANTHER:PTHR10926 | PANTHER:PTHR10926:SF45 | PFAM:PF03381 | PIRSF:PIRSF015840 | ProteinID:CDY08407 |
| ProteinID:CDY08407.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EE2A92 | UniProt:A0A078F5N6 | MapMan:5.8.2.1.1.2 |
| MapMan:24.1.2.4.1.2 | : | : | : | : | : |
Description
BnaA05g26430DBnaA05g26430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F5N6]
Coordinates
chrLK031986:-:78094..80128
Molecular Weight (calculated)
38490.2 Da
IEP (calculated)
9.919
GRAVY (calculated)
-0.343
Length
343 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSNTASSSS APAGSSKSKR PKYSKFTQQE LPACKPILTP GWVILTFLVI SVIFIPLGVV SLFASQDVVE IVDRYDNDCV PTPARTNKVA YIQGGSDKSC
101: NRTLVVPKKM KQPIYVYYQL ENFYQNHRRY VKSRSDSQLR SVKDENQIDA CKPEDDVNGR PIVPCGLIAW SLFNDTYALS KNNQPLTVNK RGIAWKSDRE
201: HKFGKNVFPK NFQEGNITGG GRLDANKSLS EQEDLIVWMR TAALPTFRKL YGKIESDLEK GDTIHVTLLN NYNTYSFDGK KKLVLSTTSW LGGKNDFLGI
301: AYLTVGGICF FLALVFTIMY LVKPRRLGDP TYLSWNRVPG GGR
101: NRTLVVPKKM KQPIYVYYQL ENFYQNHRRY VKSRSDSQLR SVKDENQIDA CKPEDDVNGR PIVPCGLIAW SLFNDTYALS KNNQPLTVNK RGIAWKSDRE
201: HKFGKNVFPK NFQEGNITGG GRLDANKSLS EQEDLIVWMR TAALPTFRKL YGKIESDLEK GDTIHVTLLN NYNTYSFDGK KKLVLSTTSW LGGKNDFLGI
301: AYLTVGGICF FLALVFTIMY LVKPRRLGDP TYLSWNRVPG GGR
001: MSSSNTPSSS AAAAGSIDSS AARRNSKRPK YSKFTQQELP ACKPILTPGW VISTFLIISV IFIPLGVISL FASQDVVEIV DRYDSACIPL SDRANKVAYI
101: QGTGNKSCTR TLIVPKRMKQ PIYVYYQLEN FYQNHRRYVK SRSDSQLRSV KDENQIDACK PEDDFGGQPI VPCGLIAWSL FNDTYVLSRN NQGLTVNKKG
201: IAWKSDKEHK FGKNVFPKNF QKGNLTGGAS LDPNKPLSDQ EDLIVWMRTA ALPTFRKLYG KIESDLEKGE NIQVTLQNNY NTYSFSGKKK LVLSTTSWLG
301: GKNDFLGIAY LTVGGICFVL ALAFTVMYLV KPRRLGDPTY LSWNRIPGGR
101: QGTGNKSCTR TLIVPKRMKQ PIYVYYQLEN FYQNHRRYVK SRSDSQLRSV KDENQIDACK PEDDFGGQPI VPCGLIAWSL FNDTYVLSRN NQGLTVNKKG
201: IAWKSDKEHK FGKNVFPKNF QKGNLTGGAS LDPNKPLSDQ EDLIVWMRTA ALPTFRKLYG KIESDLEKGE NIQVTLQNNY NTYSFSGKKK LVLSTTSWLG
301: GKNDFLGIAY LTVGGICFVL ALAFTVMYLV KPRRLGDPTY LSWNRIPGGR
Arabidopsis Description
ALIS1ALA-interacting subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTW0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.