CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
golgi 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX81761	Canola	plastid	99.14	99.14
AT1G16360.2	Thale cress	plastid	93.43	93.43
CDX67994	Canola	plasma membrane	82.86	84.8
CDX79320	Canola	plasma membrane	82.57	84.75
CDY42411	Canola	plastid	73.14	73.78
CDY10503	Canola	plastid	72.86	73.49
CDY08407	Canola	plasma membrane, plastid	70.86	72.3
CDY42174	Canola	plastid	71.43	71.43
KRH13042	Soybean	plasma membrane	66.57	67.73
KRH44838	Soybean	plasma membrane, plastid	66.0	67.15
GSMUA_Achr6P20180_001	Banana	plastid	66.57	66.38
KRH13775	Soybean	plasma membrane, plastid	65.14	66.28
CDX67738	Canola	endoplasmic reticulum, extracellular, peroxisome	35.14	66.13
GSMUA_Achr11P...	Banana	plasma membrane, plastid	65.43	65.24
KRH43674	Soybean	plasma membrane, plastid	64.0	65.12
Solyc05g054800.1.1	Tomato	nucleus	64.57	64.57
TraesCS7A01G482200.1	Wheat	plasma membrane	64.0	63.82
TraesCS7B01G384400.1	Wheat	plasma membrane	64.0	63.82
TraesCS7D01G469100.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane, plastid	64.29	63.74
Zm00001d015401_P001	Maize	plastid	63.43	63.61
TraesCS6D01G145600.2	Wheat	plasma membrane, plastid	62.57	62.93
TraesCS6A01G155600.1	Wheat	plasma membrane, plastid	62.29	62.64
TraesCS6B01G183800.1	Wheat	plasma membrane, plastid	62.0	62.36
Os02t0173800-01	Rice	plasma membrane	62.29	62.29
Zm00001d053778_P001	Maize	plasma membrane	62.0	62.18
Os06t0665000-01	Rice	plasma membrane	63.43	62.01
EES06351	Sorghum	plastid	61.71	61.89
Zm00001d036654_P002	Maize	endoplasmic reticulum, golgi, plasma membrane, plastid	61.71	61.89
EER88783	Sorghum	plasma membrane, plastid	61.43	61.08
HORVU6Hr1G031530.3	Barley	plastid	59.71	59.38
HORVU0Hr1G022300.1	Barley	endoplasmic reticulum	64.0	56.42
CDX77634	Canola	golgi	17.71	54.87
VIT_19s0085g00850.t01	Wine grape	plastid	66.29	54.85
CDY35146	Canola	plasma membrane	52.86	54.09
CDY03242	Canola	golgi, peroxisome, plasma membrane, plastid	52.29	53.51
Zm00001d046948_P004	Maize	plasma membrane	58.57	48.81
Bra026722.1-P	Field mustard	cytosol, golgi, plasma membrane	93.71	48.16
PGSC0003DMT400060190	Potato	plasma membrane	67.71	39.77
CDY00796	Canola	plastid	70.86	39.12
CDX73805	Canola	plastid	70.57	38.78

Protein Annotations

EnsemblPlants:CDY51005	EnsemblPlantsGene:GSBRNA2T00097986001	GO:A0A078IIV8	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:CDC50/LEM3_fam	PANTHER:PTHR10926	PANTHER:PTHR10926:SF45	PFAM:PF03381	PIRSF:PIRSF015840	ProteinID:CDY51005
ProteinID:CDY51005.1	TMHMM:TMhelix	UniParc:UPI0004EDFF08	UniProt:A0A078IIV8	MapMan:5.8.2.1.1.2	MapMan:24.1.2.4.1.2

Description

BnaA09g56340DBnaA09g56340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IIV8]

Coordinates

chrLK032955:+:93925..96089

Molecular Weight (calculated)

39276.1 Da

IEP (calculated)

9.688

GRAVY (calculated)

-0.292

Length

350 amino acids

Sequence
(BLAST)

001: MSFSATSSIA LGGGSPEASA AKITSKRPKY SRFTQQELPA CKPILTPKWV ILTFLVSGVV FIPLGAICLF ASQGVIEIVD QYDIDCIPLS FRDNKVRYIQ
101: GIEDKRCNRT ITVTKTMKNP VYVYYQLENY YQNHRRYVKS RQDGQLRSPK DENDVKSCAP EDTVGGEPIV PCGLVAWSLF NDTYDFTRNN QKLSVNKKDI
201: SWKSDRDSKF GKNVFPKNFQ KGFPIGGKSL DPKIPLSEQE DLIVWMRTAA LPIFRKLYGK IDTDLEAGDT INVLLQNNYN TYSFNGKKKL VLSTTSWLGG
301: RNDFLGIAYL TVGSICLSLA VFFSVLYLAK PRQLGDPSYL SWNRSAGGGR

Best Arabidopsis Sequence Match ( AT1G16360.2 )
(BLAST)

001: MSFSATSSIA LGGGSAEASA AKNTSKRPKY SRFTQQELPA CKPILTPKWV ILTFLVSGVV FIPLGVICLF ASQGVIEIVD RYDTDCIPLS SRDNKVRYIQ
101: GLEDKRCNRT ITVTKTMKNP VYVYYQLENY YQNHRRYVKS RQDGQLRSPK DEHETKSCAP EDTLGGQPIV PCGLVAWSLF NDTYDFTRNN QKLPVNKKDI
201: SWKSDRESKF GKNVFPKNFQ KGSLIGGKSL DQDIPLSEQE DLIVWMRTAA LPTFRKLYGK IDTDLQAGDT IKVLLQNNYN TYSFNGKKKL VLSTTSWLGG
301: RNDFLGIAYL TVGSICLFLA VSFSVLYLAK PRQLGDPSYL SWNRSAGGGR

Arabidopsis Description

LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Source:TAIR;Acc:AT1G16360]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.