Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 2
- plasma membrane 4
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0747400-01 | |
| Os06t0226700-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G54320.1 | Os02t0747400-01 | AT3G47620.1 | 21798944 |
| AT1G54320.1 | Os06t0226700-01 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER88783 | Sorghum | plasma membrane, plastid | 85.2 | 86.65 |
| Zm00001d036654_P002 | Maize | endoplasmic reticulum, golgi, plasma membrane, plastid | 84.36 | 86.53 |
| TraesCS7B01G384400.1 | Wheat | plasma membrane | 84.36 | 86.04 |
| TraesCS7D01G469100.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 84.64 | 85.84 |
| TraesCS7A01G482200.1 | Wheat | plasma membrane | 84.08 | 85.75 |
| Os02t0173800-01 | Rice | plasma membrane | 75.98 | 77.71 |
| HORVU0Hr1G022300.1 | Barley | endoplasmic reticulum | 84.64 | 76.32 |
| GSMUA_Achr11P... | Banana | plasma membrane, plastid | 72.07 | 73.5 |
| GSMUA_Achr6P20180_001 | Banana | plastid | 71.51 | 72.93 |
| CDY10503 | Canola | plastid | 67.6 | 69.74 |
| CDY42411 | Canola | plastid | 67.32 | 69.45 |
| AT1G54320.1 | Thale cress | plastid | 67.04 | 68.77 |
| KRH43674 | Soybean | plasma membrane, plastid | 65.64 | 68.31 |
| KRH13042 | Soybean | plasma membrane | 65.64 | 68.31 |
| KRH13775 | Soybean | plasma membrane, plastid | 65.08 | 67.73 |
| AT3G12740.1 | Thale cress | plastid | 66.2 | 67.71 |
| CDY08407 | Canola | plasma membrane, plastid | 64.25 | 67.06 |
| Bra034736.1-P | Field mustard | plasma membrane, plastid | 64.25 | 67.06 |
| Bra001467.1-P | Field mustard | plastid | 65.08 | 66.76 |
| CDY42174 | Canola | plastid | 65.08 | 66.57 |
| KRH44838 | Soybean | plasma membrane, plastid | 63.97 | 66.57 |
| Bra030808.1-P | Field mustard | plastid | 66.76 | 66.2 |
| Zm00001d046948_P004 | Maize | plasma membrane | 77.37 | 65.95 |
| AT1G16360.2 | Thale cress | plastid | 63.41 | 64.86 |
| CDX79320 | Canola | plasma membrane | 61.73 | 64.81 |
| Solyc05g054800.1.1 | Tomato | nucleus | 63.13 | 64.57 |
| CDX67994 | Canola | plasma membrane | 60.61 | 63.45 |
| CDY51005 | Canola | plastid | 62.01 | 63.43 |
| CDX81761 | Canola | plastid | 62.01 | 63.43 |
| Bra003610.1-P | Field mustard | plasma membrane | 60.34 | 63.16 |
| AT1G79450.1 | Thale cress | plasma membrane | 61.73 | 63.14 |
| CDX67738 | Canola | endoplasmic reticulum, extracellular, peroxisome | 32.12 | 61.83 |
| Os09t0560600-01 | Rice | plasma membrane | 58.94 | 60.11 |
| Os03t0120100-01 | Rice | plasma membrane | 56.7 | 59.71 |
| Os03t0785500-01 | Rice | plasma membrane | 55.59 | 56.7 |
| VIT_19s0085g00850.t01 | Wine grape | plastid | 65.08 | 55.08 |
| Os05t0529900-00 | Rice | plasma membrane | 52.79 | 54.94 |
| PGSC0003DMT400060190 | Potato | plasma membrane | 65.08 | 39.09 |
| CDY00796 | Canola | plastid | 65.64 | 37.07 |
| CDX73805 | Canola | plastid | 65.08 | 36.58 |
| Bra026722.1-P | Field mustard | cytosol, golgi, plasma membrane | 61.73 | 32.45 |
| Os09t0560700-01 | Rice | cytosol, peroxisome, plastid | 1.4 | 1.54 |
Protein Annotations
| EMBL:AK104873 | EnsemblPlants:Os06t0665000-01 | EnsemblPlantsGene:Os06g0665000 | EntrezGene:4341775 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:CDC50/LEM3_fam | PANTHER:PTHR10926 | PANTHER:PTHR10926:SF30 | PFAM:PF03381 | PIRSF:PIRSF015840 |
| ProteinID:BAD45383.1 | ProteinID:BAF20216.1 | ProteinID:BAS99025.1 | RefSeq:XP_015643691.1 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI000043A291 | UniProt:Q655Y4 | MapMan:5.8.2.1.1.2 | MapMan:24.1.2.4.1.2 | : | : |
Description
Protein of unknown function DUF284, transmembrane eukaryotic family protein. (Os06t0665000-01);Protein of unknown function DUF284, transmembrane eukaryotic family protein. (Os06t0665000-02)
Coordinates
chr6:+:27466365..27469715
Molecular Weight (calculated)
39745.4 Da
IEP (calculated)
9.606
GRAVY (calculated)
-0.339
Length
358 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNHAAGGST SNGGSGVDGD GGGGGGAARR NTKMPKYSKF TQQELPACKP ILTPKWVVSV FFLVGVIFVP VGVVSLLAAQ NVVEIVDRYD DACVPANMTD
101: NKLAYIQNPN ISKECTRTLT ITEDMNQPIF VYYQLDNFYQ NHRRYVKSRN DGQLRDAAKA NQTSACEPEK TTADGKPIVP CGLIAWSLFN DTYSFTRGNE
201: NLTVDKKDIS WKSDREHKFG KNVYPSNFQN GLLKGGGTLD PAIPLSEQED LIVWMRTAAL PTFRKLYGRI YVDLKKNDTI TVKLSNNYNT YNFGGKKKLV
301: LSTATWLGGK NDFLGFAYVI VGGVCFFLAF AFTLLYLIKP RKLGDHNYLS WNRHPGGR
101: NKLAYIQNPN ISKECTRTLT ITEDMNQPIF VYYQLDNFYQ NHRRYVKSRN DGQLRDAAKA NQTSACEPEK TTADGKPIVP CGLIAWSLFN DTYSFTRGNE
201: NLTVDKKDIS WKSDREHKFG KNVYPSNFQN GLLKGGGTLD PAIPLSEQED LIVWMRTAAL PTFRKLYGRI YVDLKKNDTI TVKLSNNYNT YNFGGKKKLV
301: LSTATWLGGK NDFLGFAYVI VGGVCFFLAF AFTLLYLIKP RKLGDHNYLS WNRHPGGR
001: MSSNTASSSA GAAGSGDSSA ARKNSKRPKY SKFTQQELPA CKPILTPGWV ISTFLIVSVI FIPLGVISLF ASQDVVEIVD RYDTECIPAP ARTNKVAYIQ
101: GDGDKVCNRD LKVTKRMKQP IYVYYQLENF YQNHRRYVKS RSDSQLRSTK YENQISACKP EDDVGGQPIV PCGLIAWSLF NDTYALSRNN VSLAVNKKGI
201: AWKSDKEHKF GNKVFPKNFQ KGNITGGATL DPRIPLSEQE DLIVWMRTAA LPTFRKLYGK IESDLEMGDT IHVKLNNNYN TYSFNGKKKL VLSTTSWLGG
301: KNDFLGIAYL TVGGICFILA LAFTIMYLVK PRRLGDPSYL SWNRNPGGR
101: GDGDKVCNRD LKVTKRMKQP IYVYYQLENF YQNHRRYVKS RSDSQLRSTK YENQISACKP EDDVGGQPIV PCGLIAWSLF NDTYALSRNN VSLAVNKKGI
201: AWKSDKEHKF GNKVFPKNFQ KGNITGGATL DPRIPLSEQE DLIVWMRTAA LPTFRKLYGK IESDLEMGDT IHVKLNNNYN TYSFNGKKKL VLSTTSWLGG
301: KNDFLGIAYL TVGGICFILA LAFTIMYLVK PRRLGDPSYL SWNRNPGGR
Arabidopsis Description
ALIS3ALA-interacting subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLK2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.