Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42411 | Canola | plastid | 91.4 | 91.93 |
| CDY10503 | Canola | plastid | 90.83 | 91.35 |
| Bra030808.1-P | Field mustard | plastid | 90.83 | 87.81 |
| AT3G12740.1 | Thale cress | plastid | 87.39 | 87.14 |
| CDX67738 | Canola | endoplasmic reticulum, extracellular, peroxisome | 40.69 | 76.34 |
| KRH43674 | Soybean | plasma membrane, plastid | 73.93 | 75.0 |
| KRH13042 | Soybean | plasma membrane | 73.35 | 74.42 |
| AT1G79450.1 | Thale cress | plasma membrane | 74.5 | 74.29 |
| KRH13775 | Soybean | plasma membrane, plastid | 73.07 | 74.13 |
| KRH44838 | Soybean | plasma membrane, plastid | 72.49 | 73.55 |
| AT1G16360.2 | Thale cress | plastid | 73.35 | 73.14 |
| GSMUA_Achr6P20180_001 | Banana | plastid | 71.35 | 70.94 |
| GSMUA_Achr11P... | Banana | plasma membrane, plastid | 71.06 | 70.66 |
| Zm00001d036654_P002 | Maize | endoplasmic reticulum, golgi, plasma membrane, plastid | 69.05 | 69.05 |
| Os02t0173800-01 | Rice | plasma membrane | 69.05 | 68.86 |
| Zm00001d015401_P001 | Maize | plastid | 68.77 | 68.77 |
| Solyc05g054800.1.1 | Tomato | nucleus | 68.77 | 68.57 |
| Zm00001d053778_P001 | Maize | plasma membrane | 68.48 | 68.48 |
| EES06351 | Sorghum | plastid | 68.19 | 68.19 |
| EER88783 | Sorghum | plasma membrane, plastid | 68.77 | 68.18 |
| TraesCS6D01G145600.2 | Wheat | plasma membrane, plastid | 67.62 | 67.82 |
| TraesCS6A01G155600.1 | Wheat | plasma membrane, plastid | 67.34 | 67.53 |
| TraesCS6B01G183800.1 | Wheat | plasma membrane, plastid | 67.34 | 67.53 |
| Os06t0665000-01 | Rice | plasma membrane | 68.77 | 67.04 |
| TraesCS7A01G482200.1 | Wheat | plasma membrane | 67.05 | 66.67 |
| TraesCS7B01G384400.1 | Wheat | plasma membrane | 66.76 | 66.38 |
| TraesCS7D01G469100.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 67.05 | 66.29 |
| HORVU6Hr1G031530.3 | Barley | plastid | 63.9 | 63.35 |
| VIT_19s0085g00850.t01 | Wine grape | plastid | 73.64 | 60.76 |
| HORVU0Hr1G022300.1 | Barley | endoplasmic reticulum | 67.91 | 59.7 |
| AT5G46150.1 | Thale cress | golgi, peroxisome, plasma membrane | 54.44 | 55.39 |
| Zm00001d046948_P004 | Maize | plasma membrane | 64.47 | 53.57 |
| PGSC0003DMT400060190 | Potato | plasma membrane | 69.91 | 40.94 |
Protein Annotations
| MapMan:24.1.2.4.1.2 | MapMan:5.8.2.1.1.2 | EntrezGene:841873 | UniProt:A0A178WKH1 | ProteinID:AAD25612.1 | ProteinID:AEE33080.1 |
| EMBL:AF446869 | ArrayExpress:AT1G54320 | EnsemblPlantsGene:AT1G54320 | RefSeq:AT1G54320 | TAIR:AT1G54320 | RefSeq:AT1G54320-TAIR-G |
| EnsemblPlants:AT1G54320.1 | TAIR:AT1G54320.1 | EMBL:AY045672 | EMBL:AY053406 | Unigene:At.11809 | InterPro:CDC50/LEM3_fam |
| GO:GO:0000139 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0005794 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0031902 | RefSeq:NP_564656.1 | ProteinID:OAP18361.1 |
| PFAM:PF03381 | PIRSF:PIRSF015840 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PANTHER:PTHR10926 | PANTHER:PTHR10926:SF45 | UniProt:Q9SLK2 | TMHMM:TMhelix | UniParc:UPI00000A0EF4 | SEG:seg |
Description
ALIS3ALA-interacting subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLK2]
Coordinates
chr1:-:20275534..20277981
Molecular Weight (calculated)
38956.8 Da
IEP (calculated)
10.007
GRAVY (calculated)
-0.337
Length
349 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSNTASSSA GAAGSGDSSA ARKNSKRPKY SKFTQQELPA CKPILTPGWV ISTFLIVSVI FIPLGVISLF ASQDVVEIVD RYDTECIPAP ARTNKVAYIQ
101: GDGDKVCNRD LKVTKRMKQP IYVYYQLENF YQNHRRYVKS RSDSQLRSTK YENQISACKP EDDVGGQPIV PCGLIAWSLF NDTYALSRNN VSLAVNKKGI
201: AWKSDKEHKF GNKVFPKNFQ KGNITGGATL DPRIPLSEQE DLIVWMRTAA LPTFRKLYGK IESDLEMGDT IHVKLNNNYN TYSFNGKKKL VLSTTSWLGG
301: KNDFLGIAYL TVGGICFILA LAFTIMYLVK PRRLGDPSYL SWNRNPGGR
101: GDGDKVCNRD LKVTKRMKQP IYVYYQLENF YQNHRRYVKS RSDSQLRSTK YENQISACKP EDDVGGQPIV PCGLIAWSLF NDTYALSRNN VSLAVNKKGI
201: AWKSDKEHKF GNKVFPKNFQ KGNITGGATL DPRIPLSEQE DLIVWMRTAA LPTFRKLYGK IESDLEMGDT IHVKLNNNYN TYSFNGKKKL VLSTTSWLGG
301: KNDFLGIAYL TVGGICFILA LAFTIMYLVK PRRLGDPSYL SWNRNPGGR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.