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Wine grape
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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 6
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid, secretory
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plasma membrane
Plant-mPloc:plastid
PProwler:secretory
TargetP:plastid
WoLF PSORT:plasma membrane
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
VIT_17s0000g06020.t01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G54320.1 VIT_17s0000g06020.t01 AT3G47620.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY42411 Canola plastid 61.23 74.64
KRH13042 Soybean plasma membrane 60.52 74.42
CDY10503 Canola plastid 60.99 74.35
AT1G54320.1 Thale cress plastid 60.76 73.64
KRH13775 Soybean plasma membrane, plastid 59.81 73.55
KRH43674 Soybean plasma membrane, plastid 59.57 73.26
KRH44838 Soybean plasma membrane, plastid 59.34 72.97
AT3G12740.1 Thale cress plastid 60.28 72.86
Bra001467.1-P Field mustard plastid 59.57 72.21
VIT_00s1667g00010.t01 Wine grape plasma membrane 52.48 72.08
GSMUA_Achr11P... Banana plasma membrane, plastid 59.57 71.79
GSMUA_Achr6P20180_001 Banana plastid 59.34 71.51
Bra030808.1-P Field mustard plastid 60.76 71.19
CDY42174 Canola plastid 58.87 71.14
CDY08407 Canola plasma membrane, plastid 57.45 70.85
Bra034736.1-P Field mustard plasma membrane, plastid 57.45 70.85
VIT_00s2279g00010.t01 Wine grape cytosol 39.95 70.71
AT1G79450.1 Thale cress plasma membrane 57.68 69.71
CDX79320 Canola plasma membrane 56.03 69.5
TraesCS6D01G145600.2 Wheat plasma membrane, plastid 56.97 69.25
TraesCS6A01G155600.1 Wheat plasma membrane, plastid 56.74 68.97
TraesCS6B01G183800.1 Wheat plasma membrane, plastid 56.74 68.97
AT1G16360.2 Thale cress plastid 56.74 68.57
Solyc05g054800.1.1 Tomato nucleus 56.74 68.57
CDX67994 Canola plasma membrane 55.32 68.42
EER88783 Sorghum plasma membrane, plastid 56.74 68.18
Bra003610.1-P Field mustard plasma membrane 55.08 68.13
Os02t0173800-01 Rice plasma membrane 56.26 68.0
Zm00001d036654_P002 Maize endoplasmic reticulum, golgi, plasma membrane, plastid 56.03 67.91
HORVU6Hr1G031530.3 Barley plastid 56.5 67.9
CDX67738 Canola endoplasmic reticulum, extracellular, peroxisome 29.79 67.74
EES06351 Sorghum plastid 55.08 66.76
CDX81761 Canola plastid 55.08 66.57
Zm00001d015401_P001 Maize plastid 54.85 66.48
CDY51005 Canola plastid 54.85 66.29
TraesCS7A01G482200.1 Wheat plasma membrane 54.85 66.1
TraesCS7B01G384400.1 Wheat plasma membrane 54.85 66.1
TraesCS7D01G469100.1 Wheat endoplasmic reticulum, peroxisome, plasma membrane, plastid 55.08 66.01
Zm00001d053778_P001 Maize plasma membrane 53.9 65.33
Os06t0665000-01 Rice plasma membrane 55.08 65.08
VIT_10s0003g03980.t01 Wine grape endoplasmic reticulum, golgi, plasma membrane 47.99 61.33
HORVU0Hr1G022300.1 Barley endoplasmic reticulum 56.03 59.7
Zm00001d046948_P004 Maize plasma membrane 55.56 55.95
VIT_16s0115g00160.t01 Wine grape cytosol 25.77 51.42
PGSC0003DMT400060190 Potato plasma membrane 60.28 42.79
CDY00796 Canola plastid 62.88 41.96
CDX73805 Canola plastid 62.17 41.29
Bra026722.1-P Field mustard cytosol, golgi, plasma membrane 53.19 33.04
Protein Annotations
EntrezGene:100267404wikigene:100267404MapMan:24.1.2.4.1.2MapMan:5.8.2.1.1.2ProteinID:CCB48981ProteinID:CCB48981.1
InterPro:CDC50/LEM3_famUniProt:F6H9T8EMBL:FN595503GO:GO:0005575GO:GO:0016020GO:GO:0016021
EntrezGene:LOC100267404wikigene:LOC100267404PFAM:PF03381PANTHER:PTHR10926PANTHER:PTHR10926:SF45TMHMM:TMhelix
UniParc:UPI0002108D36ArrayExpress:VIT_19s0085g00850EnsemblPlantsGene:VIT_19s0085g00850EnsemblPlants:VIT_19s0085g00850.t01RefSeq:XP_002265244RefSeq:XP_002265244.1
SEG:seg:::::
Description
No Description!
Coordinates
chr19:-:23313345..23318598
Molecular Weight (calculated)
48326.2 Da
IEP (calculated)
9.577
GRAVY (calculated)
-0.306
Length
423 amino acids
Sequence
(BLAST)
001: MSSNVPSSSS GAAGSADSSA PRRNSKRPKY SRFTQQELPA CKPILTPRWV ISAFMLVGII FIPIGVAALF ASRDVVEIVD RYETDCIPEE FRNDKVNYIQ
101: KPGNKPCNRT LTVPKKMKQP IYVYYQLDNF YQNHRRYVKS RNDEQLRSGN SANETSDCKP EDYANGAVIV PCGLIAWSLF NDTYNFSRNN EQLSLNKKGI
201: SWKSDREHKF GKDVYPKNFQ NGTLIGGATL NESIPLSEQE DLIVWMRTAA LPTFRKLYGK IEVDLQINDT IQVSLENNYN TYSFNGKKKL VLSTTSWLGG
301: KNDFLGIAYL TVGGICIFLA MAFTVVYLVK PRCLASMWKQ VASLAAWRSF LLVMEQKPRR ALNKFTEPVY RAWLEYFRHI GECNLMCIKI FKKRVHIPQF
401: GTVFMHSILN SFLQEQDHCN VDV
Best Arabidopsis Sequence Match ( AT1G54320.1 )
(BLAST)
001: MSSNTASSSA GAAGSGDSSA ARKNSKRPKY SKFTQQELPA CKPILTPGWV ISTFLIVSVI FIPLGVISLF ASQDVVEIVD RYDTECIPAP ARTNKVAYIQ
101: GDGDKVCNRD LKVTKRMKQP IYVYYQLENF YQNHRRYVKS RSDSQLRSTK YENQISACKP EDDVGGQPIV PCGLIAWSLF NDTYALSRNN VSLAVNKKGI
201: AWKSDKEHKF GNKVFPKNFQ KGNITGGATL DPRIPLSEQE DLIVWMRTAA LPTFRKLYGK IESDLEMGDT IHVKLNNNYN TYSFNGKKKL VLSTTSWLGG
301: KNDFLGIAYL TVGGICFILA LAFTIMYLVK PRRLGDPSYL SWNRNPGGR
Arabidopsis Description
ALIS3ALA-interacting subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLK2]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.