Factsheet for Bra026722.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 1
cytosol 1
extracellular 1
plastid 1
mitochondrion 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51005	Canola	plastid	48.16	93.71
AT1G16360.2	Thale cress	plastid	45.08	87.71
Bra003610.1-P	Field mustard	plasma membrane	41.56	82.75
Bra034736.1-P	Field mustard	plasma membrane, plastid	35.83	71.14
Bra001467.1-P	Field mustard	plastid	35.83	69.91
Bra030808.1-P	Field mustard	plastid	36.42	68.7
KRH13042	Soybean	plasma membrane	33.33	65.99
KRH44838	Soybean	plasma membrane, plastid	33.04	65.41
KRH13775	Soybean	plasma membrane, plastid	32.89	65.12
GSMUA_Achr6P20180_001	Banana	plastid	33.48	64.96
KRH43674	Soybean	plasma membrane, plastid	32.31	63.95
GSMUA_Achr11P...	Banana	plasma membrane, plastid	32.89	63.82
TraesCS7B01G384400.1	Wheat	plasma membrane	32.75	63.53
TraesCS7A01G482200.1	Wheat	plasma membrane	32.75	63.53
Solyc05g054800.1.1	Tomato	nucleus	32.6	63.43
TraesCS7D01G469100.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane, plastid	32.75	63.17
Zm00001d015401_P001	Maize	plastid	32.31	63.04
Zm00001d053778_P001	Maize	plasma membrane	32.01	62.46
TraesCS6D01G145600.2	Wheat	plasma membrane, plastid	31.86	62.36
TraesCS6A01G155600.1	Wheat	plasma membrane, plastid	31.72	62.07
Zm00001d036654_P002	Maize	endoplasmic reticulum, golgi, plasma membrane, plastid	31.72	61.89
TraesCS6B01G183800.1	Wheat	plasma membrane, plastid	31.57	61.78
Os06t0665000-01	Rice	plasma membrane	32.45	61.73
Os02t0173800-01	Rice	plasma membrane	31.72	61.71
EER88783	Sorghum	plasma membrane, plastid	31.57	61.08
EES06351	Sorghum	plastid	31.28	61.03
HORVU6Hr1G031530.3	Barley	plastid	30.4	58.81
HORVU0Hr1G022300.1	Barley	endoplasmic reticulum	32.6	55.92
Bra017577.1-P	Field mustard	plasma membrane	26.73	53.22
VIT_19s0085g00850.t01	Wine grape	plastid	33.04	53.19
Zm00001d046948_P004	Maize	plasma membrane	30.1	48.81
PGSC0003DMT400060190	Potato	plasma membrane	34.21	39.09

Protein Annotations

MapMan:24.1.2.4.1.2	MapMan:27.2.5	Gene3D:3.40.50.12660	MapMan:5.8.2.1.1.2	EnsemblPlantsGene:Bra026722	EnsemblPlants:Bra026722.1
EnsemblPlants:Bra026722.1-P	InterPro:CDC50/LEM3_fam	InterPro:Caspase-like_dom_sf	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
UniProt:M4ED62	PFAM:PF00656	PFAM:PF03381	PANTHER:PTHR10926	PANTHER:PTHR10926:SF28	SUPFAM:SSF52129
TMHMM:TMhelix	UniParc:UPI0002542C4B	:	:	:	:

Description

AT1G16360 (E=3e-177) | LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein

Coordinates

chrA09:+:33398419..33402688

Molecular Weight (calculated)

76285.3 Da

IEP (calculated)

8.694

GRAVY (calculated)

-0.392

Length

681 amino acids

Sequence
(BLAST)

001: MAKKALLIGI NYPGTAVELR GCVNDVRRMQ KCLIDRYGFS NKDITVLIDT DKTSIQPTGK NIREALKKLI AEGEPGDVLV FHYSGHGTRL PTEEGLFDAT
101: DYDECITPCD MNLITDNEFR DMVAEVKKGC LLTIISDSCH SGGLIEEAKE QIGESYVNKP RSRIVTFLVS IVRSLLTTCG ISSNDSQRGS GGGHDSFTRE
201: SELEDGETVD MKTRYLPLDS YITLLKEQTG QTDIKYGKIR QTLVKVFGQD SSPNVMLSNS MKRNAHRGLL SMFVGKREVN TDGAGSEVKS KHPNNGILLS
301: GCQTDQRSED VYVTRTGKSY GAFSDAIQTI LSGTRQEITN KEMVLRAREI LKKQKFGQRP DSRFTQQELP ACKPILTPKW VILTFLVSGV VFIPLGAICL
401: FASQGVIEIV DQYDIDCIPL SFRDNKVRYI QGIEDKRCNR TITVTKTMKN PVYVYYQLEN YYQNHRRYVK SRQDGQLRSP KDENDVKSCA PEDTVGGEPI
501: VPCGLVAWSL FNDTYDFTRN NQKLSVNKKD ISWKSDRDSK FGKNVFPKNF QKGFPIGGKS LDPKIPLSEQ EDLIVWMRTA ALPIFRKLYG KIDTDLEAGD
601: TINVLLQNNY NTYSFNGKKK LVLSTTSWLG GRNDFLGIAY LTVGSICLSL AVFFSVLYLA KPRQLGDPSY LSWNRSAGGG R

Best Arabidopsis Sequence Match ( AT1G16360.2 )
(BLAST)

001: MSFSATSSIA LGGGSAEASA AKNTSKRPKY SRFTQQELPA CKPILTPKWV ILTFLVSGVV FIPLGVICLF ASQGVIEIVD RYDTDCIPLS SRDNKVRYIQ
101: GLEDKRCNRT ITVTKTMKNP VYVYYQLENY YQNHRRYVKS RQDGQLRSPK DEHETKSCAP EDTLGGQPIV PCGLVAWSLF NDTYDFTRNN QKLPVNKKDI
201: SWKSDRESKF GKNVFPKNFQ KGSLIGGKSL DQDIPLSEQE DLIVWMRTAA LPTFRKLYGK IDTDLQAGDT IKVLLQNNYN TYSFNGKKKL VLSTTSWLGG
301: RNDFLGIAYL TVGSICLFLA VSFSVLYLAK PRQLGDPSYL SWNRSAGGGR

Arabidopsis Description

LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Source:TAIR;Acc:AT1G16360]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.