Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G482200.1 | Wheat | plasma membrane | 98.58 | 98.58 |
| TraesCS7D01G469100.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 98.01 | 97.45 |
| EER88783 | Sorghum | plasma membrane, plastid | 86.04 | 85.8 |
| HORVU0Hr1G022300.1 | Barley | endoplasmic reticulum | 96.3 | 85.14 |
| Zm00001d036654_P002 | Maize | endoplasmic reticulum, golgi, plasma membrane, plastid | 84.62 | 85.1 |
| Os06t0665000-01 | Rice | plasma membrane | 86.04 | 84.36 |
| TraesCS6B01G183800.1 | Wheat | plasma membrane, plastid | 76.64 | 77.3 |
| GSMUA_Achr6P20180_001 | Banana | plastid | 72.36 | 72.36 |
| GSMUA_Achr11P... | Banana | plasma membrane, plastid | 71.23 | 71.23 |
| KRH13042 | Soybean | plasma membrane | 68.09 | 69.48 |
| KRH43674 | Soybean | plasma membrane, plastid | 67.81 | 69.19 |
| KRH13775 | Soybean | plasma membrane, plastid | 67.52 | 68.9 |
| CDY10503 | Canola | plastid | 67.81 | 68.59 |
| CDY42411 | Canola | plastid | 67.52 | 68.3 |
| KRH44838 | Soybean | plasma membrane, plastid | 65.53 | 66.86 |
| AT1G54320.1 | Thale cress | plastid | 66.38 | 66.76 |
| AT3G12740.1 | Thale cress | plastid | 65.81 | 66.0 |
| CDX79320 | Canola | plasma membrane | 64.1 | 65.98 |
| Bra001467.1-P | Field mustard | plastid | 65.53 | 65.9 |
| AT1G16360.2 | Thale cress | plastid | 65.53 | 65.71 |
| Solyc05g054800.1.1 | Tomato | nucleus | 65.53 | 65.71 |
| CDY08407 | Canola | plasma membrane, plastid | 64.1 | 65.6 |
| Bra034736.1-P | Field mustard | plasma membrane, plastid | 64.1 | 65.6 |
| AT1G79450.1 | Thale cress | plasma membrane | 65.24 | 65.43 |
| Zm00001d046948_P004 | Maize | plasma membrane | 78.06 | 65.24 |
| CDY42174 | Canola | plastid | 64.96 | 65.14 |
| Bra030808.1-P | Field mustard | plastid | 66.95 | 65.1 |
| CDX67994 | Canola | plasma membrane | 63.25 | 64.91 |
| Bra003610.1-P | Field mustard | plasma membrane | 62.96 | 64.62 |
| CDX81761 | Canola | plastid | 63.82 | 64.0 |
| CDY51005 | Canola | plastid | 63.82 | 64.0 |
| TraesCS4B01G350400.1 | Wheat | plasma membrane | 57.83 | 60.96 |
| TraesCS1B01G364300.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 58.69 | 60.59 |
| CDX67738 | Canola | endoplasmic reticulum, extracellular, peroxisome | 31.91 | 60.22 |
| TraesCS5B01G426100.1 | Wheat | plasma membrane | 56.41 | 57.56 |
| VIT_19s0085g00850.t01 | Wine grape | plastid | 66.1 | 54.85 |
| TraesCS5B01G384100.1 | Wheat | plasma membrane | 50.71 | 48.11 |
| PGSC0003DMT400060190 | Potato | plasma membrane | 67.52 | 39.77 |
| CDY00796 | Canola | plastid | 66.1 | 36.59 |
| CDX73805 | Canola | plastid | 65.53 | 36.11 |
| Bra026722.1-P | Field mustard | cytosol, golgi, plasma membrane | 63.53 | 32.75 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G384400.1 | EnsemblPlantsGene:TraesCS7B01G384400 | GO:GO:0005575 | GO:GO:0016020 | InterPro:CDC50/LEM3_fam | PANTHER:PTHR10926 |
| PANTHER:PTHR10926:SF30 | PFAM:PF03381 | PIRSF:PIRSF015840 | SEG:seg | TMHMM:TMhelix | MapMan:5.8.2.1.1.2 |
| MapMan:24.1.2.4.1.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7B:-:650130822..650136739
Molecular Weight (calculated)
39596.5 Da
IEP (calculated)
9.848
GRAVY (calculated)
-0.332
Length
351 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGGAAGTSN GGSGADGDAA RRNNTRMPKY SKFTQQELPA CKPILTPKWV VSVFFLVGVV FVPVGVVSLL AAQDVVEIID RYDHACVPPN MTDNKLAYIQ
101: NETIPKDCTR ILTVTKEMKQ PIYVYYQLDN FYQNHRRYVK SRNDAQLRDY KKSNTTTSCD PERFTADGKP IVPCGLIAWS LFNDTYSFTR GKDNLTVDKK
201: DISWKSDREH KFAKNVYPSN FQNGALIGGK KLNSSIPLSE QEDLIVWMRT AALPTFRKLY GRIYVDLKAN DTITVRLSNN YNTYSFGGKK KLVLSTATWL
301: GGKNDFLGFA YLIVGGLCIF LAFAFTLLYL IKPRKLGDHN YLSWNRHPAG R
101: NETIPKDCTR ILTVTKEMKQ PIYVYYQLDN FYQNHRRYVK SRNDAQLRDY KKSNTTTSCD PERFTADGKP IVPCGLIAWS LFNDTYSFTR GKDNLTVDKK
201: DISWKSDREH KFAKNVYPSN FQNGALIGGK KLNSSIPLSE QEDLIVWMRT AALPTFRKLY GRIYVDLKAN DTITVRLSNN YNTYSFGGKK KLVLSTATWL
301: GGKNDFLGFA YLIVGGLCIF LAFAFTLLYL IKPRKLGDHN YLSWNRHPAG R
001: MSTKKHNLLA NFASSDSRFT QQELPACKPI LTPKWVILTF LVSGVVFIPL GVICLFASQG VIEIVDRYDT DCIPLSSRDN KVRYIQGLED KRCNRTITVT
101: KTMKNPVYVY YQLENYYQNH RRYVKSRQDG QLRSPKDEHE TKSCAPEDTL GGQPIVPCGL VAWSLFNDTY DFTRNNQKLP VNKKDISWKS DRESKFGKNV
201: FPKNFQKGSL IGGKSLDQDI PLSEQEDLIV WMRTAALPTF RKLYGKIDTD LQAGDTIKVL LQNNYNTYSF NGKKKLVLST TSWLGGRNDF LGIAYLTVGS
301: ICLFLAVSFS VLYLAKPRQL GDPSYLSWNR SAGGGR
101: KTMKNPVYVY YQLENYYQNH RRYVKSRQDG QLRSPKDEHE TKSCAPEDTL GGQPIVPCGL VAWSLFNDTY DFTRNNQKLP VNKKDISWKS DRESKFGKNV
201: FPKNFQKGSL IGGKSLDQDI PLSEQEDLIV WMRTAALPTF RKLYGKIDTD LQAGDTIKVL LQNNYNTYSF NGKKKLVLST TSWLGGRNDF LGIAYLTVGS
301: ICLFLAVSFS VLYLAKPRQL GDPSYLSWNR SAGGGR
Arabidopsis Description
LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Source:TAIR;Acc:AT1G16360]
SUBAcon: [golgi]
SUBAcon: [golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.