Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 3
- golgi 2
- plasma membrane 4
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G54320.1 | EER88112 | AT3G47620.1 | 21798944 |
| AT1G54320.1 | EES07255 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d036654_P002 | Maize | endoplasmic reticulum, golgi, plasma membrane, plastid | 95.45 | 96.28 |
| TraesCS7B01G384400.1 | Wheat | plasma membrane | 85.8 | 86.04 |
| TraesCS7D01G469100.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 85.8 | 85.55 |
| TraesCS7A01G482200.1 | Wheat | plasma membrane | 85.23 | 85.47 |
| Os06t0665000-01 | Rice | plasma membrane | 86.65 | 85.2 |
| EES06351 | Sorghum | plastid | 76.42 | 77.08 |
| HORVU0Hr1G022300.1 | Barley | endoplasmic reticulum | 85.23 | 75.57 |
| GSMUA_Achr11P... | Banana | plasma membrane, plastid | 73.86 | 74.07 |
| Zm00001d046948_P004 | Maize | plasma membrane | 87.5 | 73.33 |
| GSMUA_Achr6P20180_001 | Banana | plastid | 72.44 | 72.65 |
| KRH43674 | Soybean | plasma membrane, plastid | 69.32 | 70.93 |
| KRH13775 | Soybean | plasma membrane, plastid | 68.47 | 70.06 |
| KRH13042 | Soybean | plasma membrane | 68.47 | 70.06 |
| CDY10503 | Canola | plastid | 69.03 | 70.03 |
| CDY42411 | Canola | plastid | 68.18 | 69.16 |
| AT1G54320.1 | Thale cress | plastid | 68.18 | 68.77 |
| KRH44838 | Soybean | plasma membrane, plastid | 66.48 | 68.02 |
| AT3G12740.1 | Thale cress | plastid | 66.19 | 66.57 |
| Bra001467.1-P | Field mustard | plastid | 65.91 | 66.48 |
| Solyc05g054800.1.1 | Tomato | nucleus | 65.62 | 66.0 |
| Bra030808.1-P | Field mustard | plastid | 67.61 | 65.93 |
| Bra034736.1-P | Field mustard | plasma membrane, plastid | 63.92 | 65.6 |
| CDY08407 | Canola | plasma membrane, plastid | 63.92 | 65.6 |
| CDY42174 | Canola | plastid | 64.77 | 65.14 |
| CDX79320 | Canola | plasma membrane | 62.78 | 64.81 |
| CDX67994 | Canola | plasma membrane | 61.65 | 63.45 |
| Bra003610.1-P | Field mustard | plasma membrane | 61.36 | 63.16 |
| AT1G79450.1 | Thale cress | plasma membrane | 62.78 | 63.14 |
| AT1G16360.2 | Thale cress | plastid | 62.5 | 62.86 |
| CDX67738 | Canola | endoplasmic reticulum, extracellular, peroxisome | 32.67 | 61.83 |
| CDY51005 | Canola | plastid | 61.08 | 61.43 |
| CDX81761 | Canola | plastid | 61.08 | 61.43 |
| EES19858 | Sorghum | plasma membrane | 59.09 | 60.82 |
| KXG40321 | Sorghum | plasma membrane | 56.53 | 58.88 |
| VIT_19s0085g00850.t01 | Wine grape | plastid | 68.18 | 56.74 |
| EER97184 | Sorghum | plasma membrane | 56.25 | 55.15 |
| KXG37410 | Sorghum | plasma membrane | 53.98 | 55.07 |
| KXG36190 | Sorghum | plastid | 46.31 | 53.97 |
| PGSC0003DMT400060190 | Potato | plasma membrane | 67.61 | 39.93 |
| CDY00796 | Canola | plastid | 66.48 | 36.91 |
| CDX73805 | Canola | plastid | 65.91 | 36.42 |
| Bra026722.1-P | Field mustard | cytosol, golgi, plasma membrane | 61.08 | 31.57 |
Protein Annotations
| EnsemblPlants:EER88783 | EnsemblPlantsGene:SORBI_3010G220100 | EntrezGene:8061582 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:CDC50/LEM3_fam | PANTHER:PTHR10926 | PANTHER:PTHR10926:SF30 | PFAM:PF03381 | PIRSF:PIRSF015840 | ProteinID:EER88783 |
| ProteinID:EER88783.1 | RefSeq:XP_002437416.1 | SEG:seg | TMHMM:TMhelix | unigene:Sbi.17845 | UniParc:UPI0001A88F3D |
| UniProt:C5Z7M2 | MapMan:5.8.2.1.1.2 | MapMan:24.1.2.4.1.2 | : | : | : |
Description
hypothetical protein
Coordinates
chr10:+:56227872..56232285
Molecular Weight (calculated)
39569.3 Da
IEP (calculated)
9.633
GRAVY (calculated)
-0.333
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSHAAGTSN GGSGDAAAGG AARRNTRMPK YSKFTQQELP ACKPILTPKW VVSVFFIVGV IFVPIGVVSL IAARDVVEII DRYDEACVPG NMTDDKLAYI
101: QNETISKECI RNLTVTKDMK QPIFVYYELD NFYQNHRRYV KSRNDAQLRD ASKANQTSAC EPEKTTANGQ PIVPCGLIAW SLFNDTYNFT RGTENLTVDK
201: KDISWKSDRE HKFGKDVYPS NFQNGALKGG ATLNPKIPLS EQEDLIVWMR TAALPTFRKL YGRIHFDLKE NDTITVRLNN NYNTYSFGGK KKLVLSTATW
301: LGGKNDFLGF AYLIVGGLCI FLAFAFTLLY FVKPRKLGDH NYLSWNRHPA GR
101: QNETISKECI RNLTVTKDMK QPIFVYYELD NFYQNHRRYV KSRNDAQLRD ASKANQTSAC EPEKTTANGQ PIVPCGLIAW SLFNDTYNFT RGTENLTVDK
201: KDISWKSDRE HKFGKDVYPS NFQNGALKGG ATLNPKIPLS EQEDLIVWMR TAALPTFRKL YGRIHFDLKE NDTITVRLNN NYNTYSFGGK KKLVLSTATW
301: LGGKNDFLGF AYLIVGGLCI FLAFAFTLLY FVKPRKLGDH NYLSWNRHPA GR
001: MSSNTASSSA GAAGSGDSSA ARKNSKRPKY SKFTQQELPA CKPILTPGWV ISTFLIVSVI FIPLGVISLF ASQDVVEIVD RYDTECIPAP ARTNKVAYIQ
101: GDGDKVCNRD LKVTKRMKQP IYVYYQLENF YQNHRRYVKS RSDSQLRSTK YENQISACKP EDDVGGQPIV PCGLIAWSLF NDTYALSRNN VSLAVNKKGI
201: AWKSDKEHKF GNKVFPKNFQ KGNITGGATL DPRIPLSEQE DLIVWMRTAA LPTFRKLYGK IESDLEMGDT IHVKLNNNYN TYSFNGKKKL VLSTTSWLGG
301: KNDFLGIAYL TVGGICFILA LAFTIMYLVK PRRLGDPSYL SWNRNPGGR
101: GDGDKVCNRD LKVTKRMKQP IYVYYQLENF YQNHRRYVKS RSDSQLRSTK YENQISACKP EDDVGGQPIV PCGLIAWSLF NDTYALSRNN VSLAVNKKGI
201: AWKSDKEHKF GNKVFPKNFQ KGNITGGATL DPRIPLSEQE DLIVWMRTAA LPTFRKLYGK IESDLEMGDT IHVKLNNNYN TYSFNGKKKL VLSTTSWLGG
301: KNDFLGIAYL TVGGICFILA LAFTIMYLVK PRRLGDPSYL SWNRNPGGR
Arabidopsis Description
ALIS3ALA-interacting subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLK2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.