CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
mitochondrion 1
golgi 2
plasma membrane 4
extracellular 2
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	extracellular, plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034351_P001	Maize	plasma membrane	93.62	93.62
Os03t0785500-01	Rice	plasma membrane	77.68	76.35
TraesCS5B01G426100.1	Wheat	plasma membrane	75.07	75.29
TraesCS5A01G423800.1	Wheat	plasma membrane	74.78	75.0
TraesCS5D01G432300.1	Wheat	plasma membrane	73.91	74.13
HORVU5Hr1G103360.3	Barley	golgi	72.75	65.71
GSMUA_Achr7P01140_001	Banana	plasma membrane	65.8	65.61
VIT_10s0003g03980.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	62.03	64.65
KRH37801	Soybean	endoplasmic reticulum, golgi, plasma membrane, plastid	63.19	62.64
KRH12833	Soybean	cytosol	42.61	57.87
Solyc08g023460.2.1	Tomato	plasma membrane	57.1	57.6
CDY35146	Canola	plasma membrane	55.36	55.85
CDX77634	Canola	golgi	18.26	55.75
CDY03242	Canola	golgi, peroxisome, plasma membrane, plastid	55.07	55.56
Bra017577.1-P	Field mustard	plasma membrane	55.07	55.56
AT5G46150.1	Thale cress	golgi, peroxisome, plasma membrane	54.78	55.1
EER88783	Sorghum	plasma membrane, plastid	55.07	53.98
EES19858	Sorghum	plasma membrane	51.88	52.34
EES06351	Sorghum	plastid	51.59	51.0
KXG40321	Sorghum	plasma membrane	48.7	49.7
KRH12834	Soybean	plasma membrane	13.91	48.0
KXG36190	Sorghum	plastid	41.16	47.02
EER97184	Sorghum	plasma membrane	48.12	46.24

Protein Annotations

EnsemblPlants:KXG37410	EnsemblPlantsGene:SORBI_3001G066300	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:CDC50/LEM3_fam
PANTHER:PTHR10926	PANTHER:PTHR10926:SF29	PFAM:PF03381	PIRSF:PIRSF015840	ProteinID:KXG37410	ProteinID:KXG37410.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI000220702A	UniProt:A0A1B6QHN8	MapMan:5.8.2.1.1.2	MapMan:24.1.2.4.1.2

Description

hypothetical protein

Coordinates

chr1:-:5037842..5042575

Molecular Weight (calculated)

39004.7 Da

IEP (calculated)

9.557

GRAVY (calculated)

-0.275

Length

345 amino acids

Sequence
(BLAST)

001: MDEASTSASG AATRRAFPPA RSGVFYRFTQ QNLPAWKPAM TPGCLIAMFL IIGIIFVPFG LLCLQSSNHV AEIIHRYDVD CVPNAYRGNR QAYIKDSSIL
101: KNCTLQAKVL EHMRAPIYVY YELENFYQNH RRYIKSRSDK QLRFGAKYTA ESCSPVQWDN NGSPIVPCGL IAWSLFNDTY DFTRGSKEIK VNRKNISWKS
201: DREHKFGRDV FPSNFQNGTL IGGGKLDPTV PLSEQEDLIV WMRTSALPKF RKLYGVIEDD LHADETITIL IGNNYNTYTF GGKKSIVLST ASWLGGKNNF
301: LGHAYIVTGS LSIFISILFA LIHVKYPRPQ GDPNCLSWNR KNSNS

Best Arabidopsis Sequence Match ( AT5G46150.2 )
(BLAST)

001: MMEVEGSMNR APDQSSFLRS RRSKALYQFK QQKLPACKPV LTPISVITVF MLMGFVFIPI GLITLRASRD AIEIIDRYDV ECIPEEYRTN KLLYITDSSI
101: PKNCTRYLKV QKYMKAPIFI YYQLDNYYQN HRRYVKSRSD QQLLHGLEYS HTSSCEPEES SNGLPIVPCG LIAWSMFNDT FTFSRERTKL NVSRNNIAWK
201: SDREHKFGKN VYPINFQNGT LIGGAKLDPK IPLSDQEDFI VWMRAAALLS FRKLYGRIEE DLEPGKVVEV NLMNNYNTYS FSGQKKLILS TSNWLGGRND
301: FLGITYLVVG SSSIVISIIF MLLHLKNPRP YGDNSWNKKS LSS

Arabidopsis Description

ALIS2Putative ALA-interacting subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q67YS6]
SUBAcon: [peroxisome,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.