CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH37801	Soybean	endoplasmic reticulum, golgi, plasma membrane, plastid	90.94	66.38
KRH12834	Soybean	plasma membrane	24.41	62.0
VIT_10s0003g03980.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	70.87	54.38
Solyc08g023460.2.1	Tomato	plasma membrane	66.93	49.71
CDX77634	Canola	golgi	21.65	48.67
GSMUA_Achr7P01140_001	Banana	plasma membrane	66.14	48.55
CDY35146	Canola	plasma membrane	64.57	47.95
Bra017577.1-P	Field mustard	plasma membrane	64.17	47.66
CDY03242	Canola	golgi, peroxisome, plasma membrane, plastid	64.17	47.66
AT5G46150.1	Thale cress	golgi, peroxisome, plasma membrane	64.17	47.52
TraesCS5A01G423800.1	Wheat	plasma membrane	63.78	47.09
TraesCS5D01G432300.1	Wheat	plasma membrane	63.39	46.8
TraesCS5B01G426100.1	Wheat	plasma membrane	63.39	46.8
Os03t0785500-01	Rice	plasma membrane	59.84	43.3
Zm00001d034351_P001	Maize	plasma membrane	58.66	43.19
KXG37410	Sorghum	plasma membrane	57.87	42.61
HORVU5Hr1G103360.3	Barley	golgi	62.6	41.62
KRH13042	Soybean	plasma membrane	53.94	39.83
KRH44838	Soybean	plasma membrane, plastid	53.54	39.53
KRH13775	Soybean	plasma membrane, plastid	53.15	39.24
KRH43674	Soybean	plasma membrane, plastid	52.76	38.95
KRH09908	Soybean	plasma membrane	52.36	38.66
KRG94866	Soybean	plasma membrane	47.64	34.67
KRH23423	Soybean	plasma membrane	51.57	34.38
KRH06673	Soybean	endoplasmic reticulum, golgi, plasma membrane	43.31	31.07

Protein Annotations

MapMan:24.1.2.4.1.2	MapMan:5.8.2.1.1.2	UniProt:A0A0R0G3P1	EMBL:ACUP02009405	EMBL:ACUP02009406	InterPro:CDC50/LEM3_fam
EnsemblPlantsGene:GLYMA_15G197600	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlants:KRH12833	ProteinID:KRH12833
ProteinID:KRH12833.1	PFAM:PF03381	PIRSF:PIRSF015840	PANTHER:PTHR10926	PANTHER:PTHR10926:SF29	TMHMM:TMhelix
UniParc:UPI0006EDD3EE	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:23084559..23093010

Molecular Weight (calculated)

28493.3 Da

IEP (calculated)

7.555

GRAVY (calculated)

-0.069

Length

254 amino acids

Sequence
(BLAST)

001: MDLHGGSLST VSTGAQAIPG HSTRDDVFYQ FTQQNLPACK PVLTAAVVFE IVDRYLIDCV PEEFRSNKVL KPMKAPIYIY YQLDNYYQNH RRRSNLHLLH
101: GLGCNDTSSC KPLESSHDLP IVPCGLMAWS LFNDTYTFSR NSSELKHVYP FNFQNGTLIG GGKLDPSIPT APLPTFRKLY GRIEEDLDVD DVIVVHLENN
201: YSTYSFGGKK KLVLSTLSWL GGKNDFLGVA NLFVGAFCIL ISIIFLLLHV KNPR

Best Arabidopsis Sequence Match ( AT1G16360.2 )
(BLAST)

001: MSFSATSSIA LGGGSAEASA AKNTSKRPKY SRFTQQELPA CKPILTPKWV ILTFLVSGVV FIPLGVICLF ASQGVIEIVD RYDTDCIPLS SRDNKVRYIQ
101: GLEDKRCNRT ITVTKTMKNP VYVYYQLENY YQNHRRYVKS RQDGQLRSPK DEHETKSCAP EDTLGGQPIV PCGLVAWSLF NDTYDFTRNN QKLPVNKKDI
201: SWKSDRESKF GKNVFPKNFQ KGSLIGGKSL DQDIPLSEQE DLIVWMRTAA LPTFRKLYGK IDTDLQAGDT IKVLLQNNYN TYSFNGKKKL VLSTTSWLGG
301: RNDFLGIAYL TVGSICLFLA VSFSVLYLAK PRQLGDPSYL SWNRSAGGGR

Arabidopsis Description

LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Source:TAIR;Acc:AT1G16360]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.