CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
golgi 1
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	golgi, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23423	Soybean	plasma membrane	86.34	77.95
VIT_00s2279g00010.t01	Wine grape	cytosol	48.84	70.29
VIT_00s1667g00010.t01	Wine grape	plasma membrane	61.92	69.16
KRG94866	Soybean	plasma membrane	67.73	66.76
GSMUA_Achr2P11380_001	Banana	plasma membrane	64.24	64.06
GSMUA_Achr4P29460_001	Banana	plasma membrane	64.53	63.79
Zm00001d038750_P006	Maize	plasma membrane	61.63	62.54
EES19858	Sorghum	plasma membrane	61.63	61.99
HORVU4Hr1G085300.1	Barley	golgi	22.97	61.72
Solyc02g036440.2.1	Tomato	plasma membrane	61.05	61.05
KRH13775	Soybean	plasma membrane, plastid	61.05	61.05
KRH13042	Soybean	plasma membrane	60.76	60.76
KRH43674	Soybean	plasma membrane, plastid	60.76	60.76
PGSC0003DMT400055262	Potato	plasma membrane	60.47	60.47
Os03t0120100-01	Rice	plasma membrane	59.3	60.0
KRH44838	Soybean	plasma membrane, plastid	59.3	59.3
Zm00001d027401_P001	Maize	plasma membrane	58.43	59.12
TraesCS4D01G345100.1	Wheat	plasma membrane	56.4	58.26
KXG40321	Sorghum	plasma membrane	56.98	57.99
TraesCS4B01G350400.1	Wheat	plasma membrane	55.81	57.66
TraesCS5A01G519200.1	Wheat	plasma membrane	56.1	57.61
TraesCS1D01G352700.1	Wheat	plasma membrane	56.69	57.35
TraesCS1B01G364300.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	56.69	57.35
HORVU5Hr1G020720.6	Barley	cytosol	38.08	56.71
TraesCS1A01G350000.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	56.98	56.16
KRH06673	Soybean	endoplasmic reticulum, golgi, plasma membrane	57.56	55.93
Os05t0529900-00	Rice	plasma membrane	55.81	55.81
KRH37801	Soybean	endoplasmic reticulum, golgi, plasma membrane, plastid	56.4	55.75
KRH12833	Soybean	cytosol	38.66	52.36
VIT_16s0115g00160.t01	Wine grape	cytosol	31.69	51.42
HORVU1Hr1G081400.10	Barley	cytosol, endoplasmic reticulum	40.7	40.35
KRH12834	Soybean	plasma membrane	11.05	38.0
HORVU6Hr1G093390.1	Barley	cytosol, endoplasmic reticulum	35.76	33.61

Protein Annotations

EMBL:ACUP02009113	EnsemblPlants:KRH09908	EnsemblPlantsGene:GLYMA_15G017800	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:CDC50/LEM3_fam	PANTHER:PTHR10926	PANTHER:PTHR10926:SF28	PFAM:PF03381	PIRSF:PIRSF015840	ProteinID:KRH09908
ProteinID:KRH09908.1	TMHMM:TMhelix	UniParc:UPI000233AD33	UniProt:I1MCS8	MapMan:5.8.2.1.1.2	MapMan:24.1.2.4.1.2

Description

hypothetical protein

Coordinates

chr15:-:1378114..1380842

Molecular Weight (calculated)

39036.5 Da

IEP (calculated)

8.153

GRAVY (calculated)

-0.381

Length

344 amino acids

Sequence
(BLAST)

001: MDMPVDKDDA PTSKRTSKKP IYSKFSQQEL PAWKPILTPG WVIATFSVIG VIFIPIGLAS LFSSESVEEA VFRYDETCLP PSHAQNAVAY IQSDTTNKTC
101: ITKWTVEHKM EAPIYIYYQL DNYYQNHRRY VKSRNDKQLW NKAAEGETNN CFPEDKTKDN QPIVPCGLIA WSMFNDTYKF STSNKDLTVN KKNIAWGSEQ
201: RSKFASDVYP KNFQRGDLIG GAKLNESIPL SQQEDLIVWM RTAALPTFRK LYGKIEVDLE VNDEIEIAIE NNYNTYEFGG KKNLVLSTTT VMGGKNPFLG
301: TAYLFVGGLS LFCAIAFILL YVIKPRPLGD PSYLSWNRNP GSMK

Best Arabidopsis Sequence Match ( AT1G16360.1 )
(BLAST)

001: MSTKKHNLLA NFASSDSRFT QQELPACKPI LTPKWVILTF LVSGVVFIPL GVICLFASQG VIEIVDRYDT DCIPLSSRDN KVRYIQGLED KRCNRTITVT
101: KTMKNPVYVY YQLENYYQNH RRYVKSRQDG QLRSPKDEHE TKSCAPEDTL GGQPIVPCGL VAWSLFNDTY DFTRNNQKLP VNKKDISWKS DRESKFGKNV
201: FPKNFQKGSL IGGKSLDQDI PLSEQEDLIV WMRTAALPTF RKLYGKIDTD LQAGDTIKVL LQNNYNTYSF NGKKKLVLST TSWLGGRNDF LGIAYLTVGS
301: ICLFLAVSFS VLYLAKPRQL GDPSYLSWNR SAGGGR

Arabidopsis Description

LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Source:TAIR;Acc:AT1G16360]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.