Factsheet for VIT_00s2279g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 2
extracellular 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1667g00010.t01	Wine grape	plasma membrane	99.58	77.27
HORVU4Hr1G085300.1	Barley	golgi	32.22	60.16
HORVU5Hr1G020720.6	Barley	cytosol	54.81	56.71
VIT_16s0115g00160.t01	Wine grape	cytosol	47.28	53.3
GSMUA_Achr4P29460_001	Banana	plasma membrane	74.06	50.86
GSMUA_Achr2P11380_001	Banana	plasma membrane	72.38	50.14
KRH09908	Soybean	plasma membrane	70.29	48.84
Os03t0120100-01	Rice	plasma membrane	68.2	47.94
KRG94866	Soybean	plasma membrane	69.46	47.56
KXG40321	Sorghum	plasma membrane	66.95	47.34
Zm00001d027401_P001	Maize	plasma membrane	66.53	46.76
TraesCS4D01G345100.1	Wheat	plasma membrane	64.85	46.55
TraesCS4B01G350400.1	Wheat	plasma membrane	64.44	46.25
Zm00001d038750_P006	Maize	plasma membrane	65.27	46.02
TraesCS5A01G519200.1	Wheat	plasma membrane	64.44	45.97
PGSC0003DMT400055262	Potato	plasma membrane	66.11	45.93
Solyc02g036440.2.1	Tomato	plasma membrane	66.11	45.93
EES19858	Sorghum	plasma membrane	65.27	45.61
VIT_10s0003g03980.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	61.92	44.71
Os05t0529900-00	Rice	plasma membrane	64.02	44.48
TraesCS1B01G364300.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	63.18	44.41
TraesCS1D01G352700.1	Wheat	plasma membrane	63.18	44.41
TraesCS1A01G350000.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	63.6	43.55
KRH23423	Soybean	plasma membrane	66.95	41.99
VIT_19s0085g00850.t01	Wine grape	plastid	70.71	39.95
KRH06673	Soybean	endoplasmic reticulum, golgi, plasma membrane	58.16	39.27
HORVU1Hr1G081400.10	Barley	cytosol, endoplasmic reticulum	40.59	27.95
HORVU6Hr1G093390.1	Barley	cytosol, endoplasmic reticulum	31.8	20.77

Protein Annotations

MapMan:24.1.2.4.1.2	MapMan:5.8.2.1.1.2	ProteinID:CCB59193	ProteinID:CCB59193.1	InterPro:CDC50/LEM3_fam	UniProt:F6HWX9
EMBL:FN596356	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PFAM:PF03381	PIRSF:PIRSF015840
PANTHER:PTHR10926	PANTHER:PTHR10926:SF28	TMHMM:TMhelix	UniParc:UPI000210A4AF	ArrayExpress:VIT_00s2279g00010	EnsemblPlantsGene:VIT_00s2279g00010
EnsemblPlants:VIT_00s2279g00010.t01	RefSeq:XP_003635634	RefSeq:XP_003635634.1	SEG:seg	:	:

Description

No Description!

Coordinates

chrUn:+:41534461..41537106

Molecular Weight (calculated)

26847.2 Da

IEP (calculated)

9.714

GRAVY (calculated)

-0.208

Length

239 amino acids

Sequence
(BLAST)

001: MLAYIQSNET NKTCTRTFLV PKQMKSPVYI YYQLDNFYQN HRRYVKGRSD KQLRSRASEN DTSSCDPEDV TSNKSAIVPC GLIAWSLFND TYGFSVNNTL
101: LGVSKKNIAW KSDQQHKFGS DVYPKNFQSG GLIGGAKLNS SIPLSQQVDL IVWMRTAALP TFRKLYGKIE VDLEANTELT VVIENNYNTY SFGGKKKLVL
201: STTSWIGGKN DFLGIAYITL GGLSLFLAIS FLLIYIIKP

Best Arabidopsis Sequence Match ( AT3G12740.1 )
(BLAST)

001: MSSSNTPSSS AAAAGSIDSS AARRNSKRPK YSKFTQQELP ACKPILTPGW VISTFLIISV IFIPLGVISL FASQDVVEIV DRYDSACIPL SDRANKVAYI
101: QGTGNKSCTR TLIVPKRMKQ PIYVYYQLEN FYQNHRRYVK SRSDSQLRSV KDENQIDACK PEDDFGGQPI VPCGLIAWSL FNDTYVLSRN NQGLTVNKKG
201: IAWKSDKEHK FGKNVFPKNF QKGNLTGGAS LDPNKPLSDQ EDLIVWMRTA ALPTFRKLYG KIESDLEKGE NIQVTLQNNY NTYSFSGKKK LVLSTTSWLG
301: GKNDFLGIAY LTVGGICFVL ALAFTVMYLV KPRRLGDPTY LSWNRIPGGR

Arabidopsis Description

ALIS1ALA-interacting subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTW0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.