Factsheet for TraesCS1D01G352700.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

golgi 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	golgi, mitochondrion, plasma membrane
MultiLoc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G364300.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	97.94	97.94
TraesCS1A01G350000.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	98.82	96.28
EES19858	Sorghum	plasma membrane	79.12	78.66
Zm00001d038750_P006	Maize	plasma membrane	76.18	76.4
Os05t0529900-00	Rice	plasma membrane	76.18	75.29
TraesCS4D01G345100.1	Wheat	plasma membrane	67.35	68.77
GSMUA_Achr2P11380_001	Banana	plasma membrane	65.59	64.64
GSMUA_Achr4P29460_001	Banana	plasma membrane	65.88	64.37
HORVU1Hr1G081400.10	Barley	cytosol, endoplasmic reticulum	64.71	63.4
VIT_00s2279g00010.t01	Wine grape	cytosol	44.41	63.18
VIT_00s1667g00010.t01	Wine grape	plasma membrane	57.06	62.99
TraesCS6D01G145600.2	Wheat	plasma membrane, plastid	61.18	59.77
PGSC0003DMT400055262	Potato	plasma membrane	60.29	59.59
Solyc02g036440.2.1	Tomato	plasma membrane	59.71	59.01
TraesCS7D01G469100.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane, plastid	61.18	58.92
KRG94866	Soybean	plasma membrane	59.41	57.88
KRH09908	Soybean	plasma membrane	57.35	56.69
TraesCS5D01G432300.1	Wheat	plasma membrane	51.18	50.58
HORVU6Hr1G093390.1	Barley	cytosol, endoplasmic reticulum	52.94	49.18
KRH06673	Soybean	endoplasmic reticulum, golgi, plasma membrane	50.29	48.31
KRH23423	Soybean	plasma membrane	54.12	48.29
VIT_16s0115g00160.t01	Wine grape	cytosol	27.94	44.81
TraesCS5D01G390300.2	Wheat	plasma membrane, plastid	47.06	44.44

Protein Annotations

EnsemblPlants:TraesCS1D01G352700.1	EnsemblPlantsGene:TraesCS1D01G352700	GO:GO:0005575	GO:GO:0016020	InterPro:CDC50/LEM3_fam	PANTHER:PTHR10926
PANTHER:PTHR10926:SF26	PFAM:PF03381	PIRSF:PIRSF015840	SEG:seg	TMHMM:TMhelix	MapMan:5.8.2.1.1.2
MapMan:24.1.2.4.1.2	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:438257145..438258754

Molecular Weight (calculated)

37197.6 Da

IEP (calculated)

8.871

GRAVY (calculated)

-0.096

Length

340 amino acids

Sequence
(BLAST)

001: MSVSGSESAA SANKPKYSKF TQQELPACKP LLTPGIVIGA FSLIGIIFVP IGLASLSASQ EIVELIDRYD EECVTASDKI GFIQNSKANK ACTRKITVPK
101: PMKGPIHVYY QLENFYQNHR RYVQSRSDQQ LRDKDYKDPK AVAKACDPEA TTGDGSLIVP CGLIAWSLFN DTYAFSVNKK SVTVNKKDIA WASDKNSKFG
201: SNVFPVNFQK GGLIGGGNLN DKLPLSEQED LIVWMRTAAL PTFRKLYGRI ETDIMASDEI TVVIQNNYNT YSFGGTKAVV LSTASWIGGK NNFIGVAYVA
301: VGGICLLLAM GFVVLYVVKP RALGDPAYLS WNKEAAEYSH

Best Arabidopsis Sequence Match ( AT1G16360.1 )
(BLAST)

001: MSTKKHNLLA NFASSDSRFT QQELPACKPI LTPKWVILTF LVSGVVFIPL GVICLFASQG VIEIVDRYDT DCIPLSSRDN KVRYIQGLED KRCNRTITVT
101: KTMKNPVYVY YQLENYYQNH RRYVKSRQDG QLRSPKDEHE TKSCAPEDTL GGQPIVPCGL VAWSLFNDTY DFTRNNQKLP VNKKDISWKS DRESKFGKNV
201: FPKNFQKGSL IGGKSLDQDI PLSEQEDLIV WMRTAALPTF RKLYGKIDTD LQAGDTIKVL LQNNYNTYSF NGKKKLVLST TSWLGGRNDF LGIAYLTVGS
301: ICLFLAVSFS VLYLAKPRQL GDPSYLSWNR SAGGGR

Arabidopsis Description

LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Source:TAIR;Acc:AT1G16360]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.