Factsheet for TraesCS1B01G364300.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane

Predictor Summary:

golgi 1
mitochondrion 1
endoplasmic reticulum 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, plasma membrane
Any Predictor:	endoplasmic reticulum, golgi, mitochondrion, plasma membrane
MultiLoc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G352700.1	Wheat	plasma membrane	97.94	97.94
TraesCS1A01G350000.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	97.35	94.84
EES19858	Sorghum	plasma membrane	79.41	78.95
Zm00001d038750_P006	Maize	plasma membrane	76.47	76.7
Os05t0529900-00	Rice	plasma membrane	76.47	75.58
TraesCS4B01G350400.1	Wheat	plasma membrane	66.18	67.57
GSMUA_Achr2P11380_001	Banana	plasma membrane	65.59	64.64
GSMUA_Achr4P29460_001	Banana	plasma membrane	65.88	64.37
HORVU1Hr1G081400.10	Barley	cytosol, endoplasmic reticulum	64.71	63.4
VIT_00s2279g00010.t01	Wine grape	cytosol	44.41	63.18
VIT_00s1667g00010.t01	Wine grape	plasma membrane	57.06	62.99
TraesCS6B01G183800.1	Wheat	plasma membrane, plastid	61.18	59.77
PGSC0003DMT400055262	Potato	plasma membrane	59.71	59.01
TraesCS7B01G384400.1	Wheat	plasma membrane	60.59	58.69
Solyc02g036440.2.1	Tomato	plasma membrane	59.12	58.43
KRG94866	Soybean	plasma membrane	59.71	58.17
KRH09908	Soybean	plasma membrane	57.35	56.69
TraesCS5B01G426100.1	Wheat	plasma membrane	52.06	51.45
HORVU6Hr1G093390.1	Barley	cytosol, endoplasmic reticulum	52.94	49.18
KRH06673	Soybean	endoplasmic reticulum, golgi, plasma membrane	50.59	48.59
KRH23423	Soybean	plasma membrane	53.82	48.03
VIT_16s0115g00160.t01	Wine grape	cytosol	27.94	44.81
TraesCS5B01G384100.1	Wheat	plasma membrane	46.47	42.7

Protein Annotations

EnsemblPlants:TraesCS1B01G364300.1	EnsemblPlantsGene:TraesCS1B01G364300	GO:GO:0005575	GO:GO:0016020	InterPro:CDC50/LEM3_fam	PANTHER:PTHR10926
PANTHER:PTHR10926:SF26	PFAM:PF03381	PIRSF:PIRSF015840	SEG:seg	TMHMM:TMhelix	MapMan:5.8.2.1.1.2
MapMan:24.1.2.4.1.2	:	:	:	:	:

Description

No Description!

Coordinates

chr1B:-:593889417..593891058

Molecular Weight (calculated)

37328.8 Da

IEP (calculated)

8.871

GRAVY (calculated)

-0.119

Length

340 amino acids

Sequence
(BLAST)

001: MSVSGSESRA SANKPKYSKF TQQELPACKP LLTPGIVIGA FSLIGIIFVP IGLASLSASQ EIVELIDRYD EECVTASDKI GFIQDSKANK ACTRKITVPK
101: PMKGPIHVYY QLENFYQNHR RYVKSRSDQQ LRDKDYKDPQ AVIKACDQEA TTGDGSLIVP CGLIAWSLFN DTYAFSVNKK SVTVNKKDIA WASDKNSKFG
201: SNVFPVNFQK GGLIGGGNLN DKLPLSEQED LIVWMRTAAL PTFRKLYGRI ETDIMASDEI TVVIQNNYNT YSFGGTKAVV LSTASWIGGK NNFIGVAYVA
301: VGGICLLLAM GFAVLYVVKP RALGDPAYLS WNKEAAEYSH

Best Arabidopsis Sequence Match ( AT1G16360.1 )
(BLAST)

001: MSTKKHNLLA NFASSDSRFT QQELPACKPI LTPKWVILTF LVSGVVFIPL GVICLFASQG VIEIVDRYDT DCIPLSSRDN KVRYIQGLED KRCNRTITVT
101: KTMKNPVYVY YQLENYYQNH RRYVKSRQDG QLRSPKDEHE TKSCAPEDTL GGQPIVPCGL VAWSLFNDTY DFTRNNQKLP VNKKDISWKS DRESKFGKNV
201: FPKNFQKGSL IGGKSLDQDI PLSEQEDLIV WMRTAALPTF RKLYGKIDTD LQAGDTIKVL LQNNYNTYSF NGKKKLVLST TSWLGGRNDF LGIAYLTVGS
301: ICLFLAVSFS VLYLAKPRQL GDPSYLSWNR SAGGGR

Arabidopsis Description

LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Source:TAIR;Acc:AT1G16360]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.