Factsheet for HORVU6Hr1G093390.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

plastid 1
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum
Any Predictor:	endoplasmic reticulum, plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G081400.10	Barley	cytosol, endoplasmic reticulum	77.87	82.13
TraesCS1D01G352700.1	Wheat	plasma membrane	49.18	52.94
TraesCS1B01G364300.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	49.18	52.94
TraesCS1A01G350000.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	49.18	51.58
EES19858	Sorghum	plasma membrane	44.54	47.66
Zm00001d038750_P006	Maize	plasma membrane	43.99	47.49
Os05t0529900-00	Rice	plasma membrane	41.53	44.19
GSMUA_Achr4P29460_001	Banana	plasma membrane	37.43	39.37
GSMUA_Achr2P11380_001	Banana	plasma membrane	36.89	39.13
VIT_00s1667g00010.t01	Wine grape	plasma membrane	32.51	38.64
HORVU6Hr1G031530.3	Barley	plastid	34.97	36.36
KRG94866	Soybean	plasma membrane	34.15	35.82
KRH09908	Soybean	plasma membrane	33.61	35.76
PGSC0003DMT400055262	Potato	plasma membrane	33.06	35.17
Solyc02g036440.2.1	Tomato	plasma membrane	32.79	34.88
HORVU0Hr1G022300.1	Barley	endoplasmic reticulum	36.07	33.25
VIT_00s2279g00010.t01	Wine grape	cytosol	20.77	31.8
KRH06673	Soybean	endoplasmic reticulum, golgi, plasma membrane	30.6	31.64
KRH23423	Soybean	plasma membrane	30.05	28.87
HORVU5Hr1G103360.3	Barley	golgi	29.78	28.53
HORVU5Hr1G094000.6	Barley	plasma membrane, plastid	29.51	28.42
VIT_16s0115g00160.t01	Wine grape	cytosol	16.39	28.3
HORVU5Hr1G020720.6	Barley	cytosol	16.67	26.41
HORVU4Hr1G085300.1	Barley	golgi	5.46	15.62

Protein Annotations

EnsemblPlants:HORVU6Hr1G093390.1	EnsemblPlantsGene:HORVU6Hr1G093390	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:CDC50/LEM3_fam
PANTHER:PTHR10926	PANTHER:PTHR10926:SF26	PFAM:PF03381	SEG:seg	TMHMM:TMhelix	UniParc:UPI000B46CA9F
UniProt:A0A287V867	MapMan:5.8.2.1.1.2	MapMan:24.1.2.4.1.2	:	:	:

Description

No Description!

Coordinates

chrchr6H:-:579503729..579506044

Molecular Weight (calculated)

41151.8 Da

IEP (calculated)

10.198

GRAVY (calculated)

-0.887

Length

366 amino acids

Sequence
(BLAST)

001: PGLIWMSVSG SESETSGRSA NKPKYSKFTQ QELPACKPLL TPGIVIGAFS LIGIIFVPIG LASLSASQEI VELIDRYDEE CVTASDKVGF IQDSKVDKAC
101: TRKITVPKPM KGPIHVYYQL ENYYQNHRRY VKSRSDQQLR DKDYKDTSAV TKSCDPEATT GDGSLIVPCG LIAWSLFNDT YAFSVNKKYG DGEQEGHRLA
201: QRQEQQVRKQ RLPRQLSEGR PHRRRQPQRQ TTSERAGGPD RVDADGGAAD VPEAVREDRG GHHGERRDHG GDPEQLQHVQ LRGQQGGGAV DGVVDGREEQ
301: LHRRRLRGRR RHLPPPRHGL RRPLRRQAPD PRRPRVPVVE QGVRRVLALN GTLNLQGPFC RCRCRQ

Best Arabidopsis Sequence Match ( AT1G16360.2 )
(BLAST)

001: MSFSATSSIA LGGGSAEASA AKNTSKRPKY SRFTQQELPA CKPILTPKWV ILTFLVSGVV FIPLGVICLF ASQGVIEIVD RYDTDCIPLS SRDNKVRYIQ
101: GLEDKRCNRT ITVTKTMKNP VYVYYQLENY YQNHRRYVKS RQDGQLRSPK DEHETKSCAP EDTLGGQPIV PCGLVAWSLF NDTYDFTRNN QKLPVNKKDI
201: SWKSDRESKF GKNVFPKNFQ KGSLIGGKSL DQDIPLSEQE DLIVWMRTAA LPTFRKLYGK IDTDLQAGDT IKVLLQNNYN TYSFNGKKKL VLSTTSWLGG
301: RNDFLGIAYL TVGSICLFLA VSFSVLYLAK PRQLGDPSYL SWNRSAGGGR

Arabidopsis Description

LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Source:TAIR;Acc:AT1G16360]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.