Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU6Hr1G075650.1 | |
| HORVU7Hr1G038130.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G54320.1 | HORVU6Hr1G075650.1 | AT3G47620.1 | 21798944 |
| AT1G54320.1 | HORVU7Hr1G038130.1 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G384400.1 | Wheat | plasma membrane | 85.14 | 96.3 |
| TraesCS7D01G469100.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 85.14 | 95.75 |
| TraesCS7A01G482200.1 | Wheat | plasma membrane | 84.38 | 95.44 |
| EER88783 | Sorghum | plasma membrane, plastid | 75.57 | 85.23 |
| Zm00001d036654_P002 | Maize | endoplasmic reticulum, golgi, plasma membrane, plastid | 74.81 | 85.1 |
| Os06t0665000-01 | Rice | plasma membrane | 76.32 | 84.64 |
| HORVU6Hr1G031530.3 | Barley | plastid | 64.99 | 73.3 |
| GSMUA_Achr6P20180_001 | Banana | plastid | 63.98 | 72.36 |
| GSMUA_Achr11P... | Banana | plasma membrane, plastid | 63.22 | 71.51 |
| KRH13042 | Soybean | plasma membrane | 61.21 | 70.64 |
| KRH43674 | Soybean | plasma membrane, plastid | 60.45 | 69.77 |
| KRH13775 | Soybean | plasma membrane, plastid | 60.2 | 69.48 |
| CDY10503 | Canola | plastid | 60.71 | 69.45 |
| CDY42411 | Canola | plastid | 60.45 | 69.16 |
| AT1G54320.1 | Thale cress | plastid | 59.7 | 67.91 |
| KRH44838 | Soybean | plasma membrane, plastid | 58.69 | 67.73 |
| AT3G12740.1 | Thale cress | plastid | 59.19 | 67.14 |
| Bra001467.1-P | Field mustard | plastid | 58.94 | 67.05 |
| CDY08407 | Canola | plasma membrane, plastid | 57.68 | 66.76 |
| Bra034736.1-P | Field mustard | plasma membrane, plastid | 57.68 | 66.76 |
| CDY42174 | Canola | plastid | 58.69 | 66.57 |
| CDX79320 | Canola | plasma membrane | 57.18 | 66.57 |
| Solyc05g054800.1.1 | Tomato | nucleus | 58.44 | 66.29 |
| AT1G16360.2 | Thale cress | plastid | 58.19 | 66.0 |
| Bra030808.1-P | Field mustard | plastid | 59.95 | 65.93 |
| AT1G79450.1 | Thale cress | plasma membrane | 57.93 | 65.71 |
| HORVU4Hr1G085300.1 | Barley | golgi | 21.16 | 65.62 |
| CDX67994 | Canola | plasma membrane | 56.42 | 65.5 |
| Zm00001d046948_P004 | Maize | plasma membrane | 69.02 | 65.24 |
| Bra003610.1-P | Field mustard | plasma membrane | 56.17 | 65.2 |
| CDY51005 | Canola | plastid | 56.42 | 64.0 |
| CDX81761 | Canola | plastid | 56.42 | 64.0 |
| CDX67738 | Canola | endoplasmic reticulum, extracellular, peroxisome | 28.97 | 61.83 |
| HORVU5Hr1G020720.6 | Barley | cytosol | 35.52 | 61.04 |
| VIT_19s0085g00850.t01 | Wine grape | plastid | 59.7 | 56.03 |
| HORVU5Hr1G103360.3 | Barley | golgi | 48.61 | 50.52 |
| HORVU5Hr1G094000.6 | Barley | plasma membrane, plastid | 44.58 | 46.58 |
| HORVU1Hr1G081400.10 | Barley | cytosol, endoplasmic reticulum | 37.78 | 43.23 |
| PGSC0003DMT400060190 | Potato | plasma membrane | 59.7 | 39.77 |
| CDY00796 | Canola | plastid | 59.45 | 37.22 |
| CDX73805 | Canola | plastid | 58.94 | 36.73 |
| HORVU6Hr1G093390.1 | Barley | cytosol, endoplasmic reticulum | 33.25 | 36.07 |
| Bra026722.1-P | Field mustard | cytosol, golgi, plasma membrane | 55.92 | 32.6 |
Protein Annotations
| EnsemblPlants:HORVU0Hr1G022300.1 | EnsemblPlantsGene:HORVU0Hr1G022300 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:CDC50/LEM3_fam |
| PANTHER:PTHR10926 | PANTHER:PTHR10926:SF30 | PFAM:PF03381 | PIRSF:PIRSF015840 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI000B47A42F | UniProt:A0A287E7E6 | MapMan:5.8.2.1.1.2 | MapMan:24.1.2.4.1.2 | : | : |
Description
ALA-interacting subunit [Source:UniProtKB/TrEMBL;Acc:A0A287E7E6]
Coordinates
chrchrUn:-:114441782..114446590
Molecular Weight (calculated)
40814.0 Da
IEP (calculated)
10.139
GRAVY (calculated)
-0.300
Length
397 amino acids
Sequence
(BLAST)
(BLAST)
001: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXLRTGAAA RRRAGTMMDG GAAGASNGGS GADADAARRN TRMPKYSKFT QQELPACKPI LTPKWVVSVF
101: FLVGVIFVPV GVVSLLAAQD VVEIIDRYDH ACVPPNMTDN KLAYIQNETI SKECTRTLTV TKEMKQPIYV YYQLDNFYQN HRRYVKSRND AQLRDSKKSN
201: TTTSCEPERF TADGKPIVPC GLIAWSLFND TYSFSRGKDN LTVNKKDISW KSDREHKFAK NVYPSNFQNG ALIGGKKLNS SIPLSEQEDL IVWMRTAALP
301: TFRKLYGRIY VDLKANDTIT VKLSNNYNTY SFGGKKKLVL STATWLGGKN DFLGFAYLIV GGLCIFLAFA FTLLYLIKPR KLGDHNYLSW NRNPAGR
101: FLVGVIFVPV GVVSLLAAQD VVEIIDRYDH ACVPPNMTDN KLAYIQNETI SKECTRTLTV TKEMKQPIYV YYQLDNFYQN HRRYVKSRND AQLRDSKKSN
201: TTTSCEPERF TADGKPIVPC GLIAWSLFND TYSFSRGKDN LTVNKKDISW KSDREHKFAK NVYPSNFQNG ALIGGKKLNS SIPLSEQEDL IVWMRTAALP
301: TFRKLYGRIY VDLKANDTIT VKLSNNYNTY SFGGKKKLVL STATWLGGKN DFLGFAYLIV GGLCIFLAFA FTLLYLIKPR KLGDHNYLSW NRNPAGR
001: MSSNTASSSA GAAGSGDSSA ARKNSKRPKY SKFTQQELPA CKPILTPGWV ISTFLIVSVI FIPLGVISLF ASQDVVEIVD RYDTECIPAP ARTNKVAYIQ
101: GDGDKVCNRD LKVTKRMKQP IYVYYQLENF YQNHRRYVKS RSDSQLRSTK YENQISACKP EDDVGGQPIV PCGLIAWSLF NDTYALSRNN VSLAVNKKGI
201: AWKSDKEHKF GNKVFPKNFQ KGNITGGATL DPRIPLSEQE DLIVWMRTAA LPTFRKLYGK IESDLEMGDT IHVKLNNNYN TYSFNGKKKL VLSTTSWLGG
301: KNDFLGIAYL TVGGICFILA LAFTIMYLVK PRRLGDPSYL SWNRNPGGR
101: GDGDKVCNRD LKVTKRMKQP IYVYYQLENF YQNHRRYVKS RSDSQLRSTK YENQISACKP EDDVGGQPIV PCGLIAWSLF NDTYALSRNN VSLAVNKKGI
201: AWKSDKEHKF GNKVFPKNFQ KGNITGGATL DPRIPLSEQE DLIVWMRTAA LPTFRKLYGK IESDLEMGDT IHVKLNNNYN TYSFNGKKKL VLSTTSWLGG
301: KNDFLGIAYL TVGGICFILA LAFTIMYLVK PRRLGDPSYL SWNRNPGGR
Arabidopsis Description
ALIS3ALA-interacting subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLK2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.