Factsheet for HORVU4Hr1G085300.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	golgi
MultiLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G020720.6	Barley	cytosol	80.47	44.59
TraesCS4D01G345100.1	Wheat	plasma membrane	86.72	33.33
TraesCS5A01G519200.1	Wheat	plasma membrane	85.16	32.54
TraesCS4B01G350400.1	Wheat	plasma membrane	84.38	32.43
VIT_00s2279g00010.t01	Wine grape	cytosol	60.16	32.22
Os03t0120100-01	Rice	plasma membrane	78.91	29.71
Zm00001d027401_P001	Maize	plasma membrane	75.78	28.53
VIT_16s0115g00160.t01	Wine grape	cytosol	46.09	27.83
KXG40321	Sorghum	plasma membrane	71.09	26.92
GSMUA_Achr4P29460_001	Banana	plasma membrane	71.09	26.15
GSMUA_Achr2P11380_001	Banana	plasma membrane	70.31	26.09
VIT_00s1667g00010.t01	Wine grape	plasma membrane	60.94	25.32
PGSC0003DMT400055262	Potato	plasma membrane	64.06	23.84
Solyc02g036440.2.1	Tomato	plasma membrane	62.5	23.26
KRH09908	Soybean	plasma membrane	61.72	22.97
KRG94866	Soybean	plasma membrane	61.72	22.64
HORVU6Hr1G031530.3	Barley	plastid	59.38	21.59
HORVU0Hr1G022300.1	Barley	endoplasmic reticulum	65.62	21.16
KRH23423	Soybean	plasma membrane	60.94	20.47
HORVU5Hr1G103360.3	Barley	golgi	52.34	17.54
KRH06673	Soybean	endoplasmic reticulum, golgi, plasma membrane	42.97	15.54
HORVU5Hr1G094000.6	Barley	plasma membrane, plastid	43.75	14.74
HORVU1Hr1G081400.10	Barley	cytosol, endoplasmic reticulum	16.41	6.05
HORVU6Hr1G093390.1	Barley	cytosol, endoplasmic reticulum	15.62	5.46

Protein Annotations

EnsemblPlants:HORVU4Hr1G085300.1	EnsemblPlantsGene:HORVU4Hr1G085300	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:CDC50/LEM3_fam
PANTHER:PTHR10926	PANTHER:PTHR10926:SF26	PFAM:PF03381	SEG:seg	TMHMM:TMhelix	UniParc:UPI000B4888C1
UniProt:A0A287PY86	MapMan:5.8.2.1.1.2	MapMan:24.1.2.4.1.2	:	:	:

Description

No Description!

Coordinates

chrchr4H:+:631485665..631486697

Molecular Weight (calculated)

12967.7 Da

IEP (calculated)

9.468

GRAVY (calculated)

0.041

Length

128 amino acids

Sequence
(BLAST)

001: XXXXXXXXXX XXKLNESIPL SEQEDLIVWM RTAALPTFRK LYGRIEKDIN ANDNVTVVIQ NNYNTYSFGG SKALVLSTAS WIGGKNNFIG IAYLTIGGLC
101: LSLAMGFLVL YMIKQRTFGD PTNLSWNR

Best Arabidopsis Sequence Match ( AT1G16360.1 )
(BLAST)

001: MSTKKHNLLA NFASSDSRFT QQELPACKPI LTPKWVILTF LVSGVVFIPL GVICLFASQG VIEIVDRYDT DCIPLSSRDN KVRYIQGLED KRCNRTITVT
101: KTMKNPVYVY YQLENYYQNH RRYVKSRQDG QLRSPKDEHE TKSCAPEDTL GGQPIVPCGL VAWSLFNDTY DFTRNNQKLP VNKKDISWKS DRESKFGKNV
201: FPKNFQKGSL IGGKSLDQDI PLSEQEDLIV WMRTAALPTF RKLYGKIDTD LQAGDTIKVL LQNNYNTYSF NGKKKLVLST TSWLGGRNDF LGIAYLTVGS
301: ICLFLAVSFS VLYLAKPRQL GDPSYLSWNR SAGGGR

Arabidopsis Description

LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Source:TAIR;Acc:AT1G16360]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.