Factsheet for TraesCS4D01G345100.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

golgi 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	golgi, plasma membrane
MultiLoc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G519200.1	Wheat	plasma membrane	99.1	98.51
TraesCS4B01G350400.1	Wheat	plasma membrane	98.5	98.5
HORVU4Hr1G085300.1	Barley	golgi	33.33	86.72
HORVU5Hr1G020720.6	Barley	cytosol	58.26	83.98
Os03t0120100-01	Rice	plasma membrane	78.68	77.06
Zm00001d027401_P001	Maize	plasma membrane	76.28	74.71
KXG40321	Sorghum	plasma membrane	74.47	73.37
TraesCS1D01G352700.1	Wheat	plasma membrane	68.77	67.35
GSMUA_Achr4P29460_001	Banana	plasma membrane	67.87	64.94
VIT_00s2279g00010.t01	Wine grape	cytosol	46.55	64.85
VIT_00s1667g00010.t01	Wine grape	plasma membrane	59.76	64.61
GSMUA_Achr2P11380_001	Banana	plasma membrane	66.37	64.06
TraesCS6D01G145600.2	Wheat	plasma membrane, plastid	62.76	60.06
TraesCS7D01G469100.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane, plastid	61.26	57.79
Solyc02g036440.2.1	Tomato	plasma membrane	58.56	56.69
PGSC0003DMT400055262	Potato	plasma membrane	58.26	56.4
KRH09908	Soybean	plasma membrane	58.26	56.4
KRG94866	Soybean	plasma membrane	58.86	56.16
TraesCS5D01G432300.1	Wheat	plasma membrane	51.05	49.42
KRH23423	Soybean	plasma membrane	54.05	47.24
VIT_16s0115g00160.t01	Wine grape	cytosol	29.73	46.7
TraesCS5D01G390300.2	Wheat	plasma membrane, plastid	48.35	44.72
KRH06673	Soybean	endoplasmic reticulum, golgi, plasma membrane	47.45	44.63

Protein Annotations

EnsemblPlants:TraesCS4D01G345100.1	EnsemblPlantsGene:TraesCS4D01G345100	GO:GO:0005575	GO:GO:0016020	InterPro:CDC50/LEM3_fam	PANTHER:PTHR10926
PANTHER:PTHR10926:SF26	PFAM:PF03381	PIRSF:PIRSF015840	TMHMM:TMhelix	MapMan:5.8.2.1.1.2	MapMan:24.1.2.4.1.2

Description

No Description!

Coordinates

chr4D:+:500012895..500016068

Molecular Weight (calculated)

37251.9 Da

IEP (calculated)

9.713

GRAVY (calculated)

-0.202

Length

333 amino acids

Sequence
(BLAST)

001: MYPLEMEGNS NPKTTNKPKY SKFTQQELPA CKPLLTPEIV IAAFALIGAL FVPIGLASLH ASRQVVELVH RYDASCVPVD DKVGFIQNSR TDKTCTVTMT
101: VPKYMKSPIH VYYLIDGFYQ NHRRYVRSRS DKQLRYKSAA HLTSDCVPEG DTADHAPIVP CGLVAWSLFN DTYTVRVNGV VTQVNKKDIA WKSDKNNKFG
201: KNIYPSNFQK GRLIGGATLN ESIPLSEQED LIVWMRTAAL PTFRKLYGRI EKDINANDNV TVVIQNNYNT YSFGGSKALV LSTASWIGGK NNFIGIAYLT
301: IGGLCLSLAM GFLVLYMVKR RNFGDPSNLS WNR

Best Arabidopsis Sequence Match ( AT1G16360.1 )
(BLAST)

001: MSTKKHNLLA NFASSDSRFT QQELPACKPI LTPKWVILTF LVSGVVFIPL GVICLFASQG VIEIVDRYDT DCIPLSSRDN KVRYIQGLED KRCNRTITVT
101: KTMKNPVYVY YQLENYYQNH RRYVKSRQDG QLRSPKDEHE TKSCAPEDTL GGQPIVPCGL VAWSLFNDTY DFTRNNQKLP VNKKDISWKS DRESKFGKNV
201: FPKNFQKGSL IGGKSLDQDI PLSEQEDLIV WMRTAALPTF RKLYGKIDTD LQAGDTIKVL LQNNYNTYSF NGKKKLVLST TSWLGGRNDF LGIAYLTVGS
301: ICLFLAVSFS VLYLAKPRQL GDPSYLSWNR SAGGGR

Arabidopsis Description

LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Source:TAIR;Acc:AT1G16360]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.