Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G183800.1 | Wheat | plasma membrane, plastid | 99.43 | 99.43 |
| TraesCS6A01G155600.1 | Wheat | plasma membrane, plastid | 99.14 | 99.14 |
| HORVU6Hr1G031530.3 | Barley | plastid | 90.8 | 89.77 |
| Os02t0173800-01 | Rice | plasma membrane | 83.05 | 82.57 |
| Zm00001d053778_P001 | Maize | plasma membrane | 81.61 | 81.38 |
| Zm00001d015401_P001 | Maize | plastid | 81.61 | 81.38 |
| EES06351 | Sorghum | plastid | 80.75 | 80.52 |
| TraesCS7D01G469100.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 76.72 | 75.64 |
| GSMUA_Achr6P20180_001 | Banana | plastid | 75.0 | 74.36 |
| GSMUA_Achr11P... | Banana | plasma membrane, plastid | 75.0 | 74.36 |
| KRH13042 | Soybean | plasma membrane | 70.98 | 71.8 |
| KRH44838 | Soybean | plasma membrane, plastid | 70.11 | 70.93 |
| KRH43674 | Soybean | plasma membrane, plastid | 69.54 | 70.35 |
| KRH13775 | Soybean | plasma membrane, plastid | 69.25 | 70.06 |
| CDY10503 | Canola | plastid | 68.97 | 69.16 |
| CDY42411 | Canola | plastid | 68.68 | 68.88 |
| AT1G54320.1 | Thale cress | plastid | 67.82 | 67.62 |
| Solyc05g054800.1.1 | Tomato | nucleus | 67.82 | 67.43 |
| CDY08407 | Canola | plasma membrane, plastid | 66.09 | 67.06 |
| Bra034736.1-P | Field mustard | plasma membrane, plastid | 65.8 | 66.76 |
| CDY42174 | Canola | plastid | 66.67 | 66.29 |
| Bra001467.1-P | Field mustard | plastid | 66.38 | 66.19 |
| AT3G12740.1 | Thale cress | plastid | 66.09 | 65.71 |
| Bra030808.1-P | Field mustard | plastid | 68.1 | 65.65 |
| AT1G16360.2 | Thale cress | plastid | 64.08 | 63.71 |
| CDX79320 | Canola | plasma membrane | 62.36 | 63.64 |
| AT1G79450.1 | Thale cress | plasma membrane | 63.79 | 63.43 |
| TraesCS4D01G345100.1 | Wheat | plasma membrane | 60.06 | 62.76 |
| CDY51005 | Canola | plastid | 62.93 | 62.57 |
| CDX81761 | Canola | plastid | 62.93 | 62.57 |
| CDX67994 | Canola | plasma membrane | 61.21 | 62.28 |
| Bra003610.1-P | Field mustard | plasma membrane | 60.92 | 61.99 |
| TraesCS1D01G352700.1 | Wheat | plasma membrane | 59.77 | 61.18 |
| CDX67738 | Canola | endoplasmic reticulum, extracellular, peroxisome | 32.47 | 60.75 |
| VIT_19s0085g00850.t01 | Wine grape | plastid | 69.25 | 56.97 |
| TraesCS5D01G432300.1 | Wheat | plasma membrane | 54.6 | 55.23 |
| TraesCS5D01G390300.2 | Wheat | plasma membrane, plastid | 49.14 | 47.5 |
| PGSC0003DMT400060190 | Potato | plasma membrane | 70.69 | 41.28 |
| CDY00796 | Canola | plastid | 66.95 | 36.75 |
| CDX73805 | Canola | plastid | 66.38 | 36.26 |
| Bra026722.1-P | Field mustard | cytosol, golgi, plasma membrane | 62.36 | 31.86 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G145600.2 | EnsemblPlantsGene:TraesCS6D01G145600 | GO:GO:0005575 | GO:GO:0016020 | InterPro:CDC50/LEM3_fam | PANTHER:PTHR10926 |
| PANTHER:PTHR10926:SF30 | PFAM:PF03381 | PIRSF:PIRSF015840 | SEG:seg | TMHMM:TMhelix | MapMan:5.8.2.1.1.2 |
| MapMan:24.1.2.4.1.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6D:+:116334787..116337503
Molecular Weight (calculated)
39057.5 Da
IEP (calculated)
9.628
GRAVY (calculated)
-0.357
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSGDAAGSS SGGSGDAGAP RRASRKPKYS KFTQQELPAC KPILTPKWVI SVFLLVGVIF VPIGVASLLA SNKVVEIVDR YDDACVPSNV TDKLAYIQNS
101: TISKTCRRTL KVPKDMKQPI FVYYQLNNFY QNHRRYVKSR NDQQLRDASK ANETTLCDPE KTRDGMAIVP CGLIAWSTFN DTYTFQHNTN NLSIDKTDIS
201: WKSDRDHKFG SDVFPKNFQK GPLIGGKTLN ESIPLSEQED LIVWMRTAAL PTFRKLYGRI YVDLKENDTI TVTLDNNYNT YSFDGKKSLV LSTSTWLGGK
301: NDFLGLAYLT VGGLCFFLAF AFTLLYLIKP RKLGDNNYLS WNRNSAGH
101: TISKTCRRTL KVPKDMKQPI FVYYQLNNFY QNHRRYVKSR NDQQLRDASK ANETTLCDPE KTRDGMAIVP CGLIAWSTFN DTYTFQHNTN NLSIDKTDIS
201: WKSDRDHKFG SDVFPKNFQK GPLIGGKTLN ESIPLSEQED LIVWMRTAAL PTFRKLYGRI YVDLKENDTI TVTLDNNYNT YSFDGKKSLV LSTSTWLGGK
301: NDFLGLAYLT VGGLCFFLAF AFTLLYLIKP RKLGDNNYLS WNRNSAGH
001: MSSNTASSSA GAAGSGDSSA ARKNSKRPKY SKFTQQELPA CKPILTPGWV ISTFLIVSVI FIPLGVISLF ASQDVVEIVD RYDTECIPAP ARTNKVAYIQ
101: GDGDKVCNRD LKVTKRMKQP IYVYYQLENF YQNHRRYVKS RSDSQLRSTK YENQISACKP EDDVGGQPIV PCGLIAWSLF NDTYALSRNN VSLAVNKKGI
201: AWKSDKEHKF GNKVFPKNFQ KGNITGGATL DPRIPLSEQE DLIVWMRTAA LPTFRKLYGK IESDLEMGDT IHVKLNNNYN TYSFNGKKKL VLSTTSWLGG
301: KNDFLGIAYL TVGGICFILA LAFTIMYLVK PRRLGDPSYL SWNRNPGGR
101: GDGDKVCNRD LKVTKRMKQP IYVYYQLENF YQNHRRYVKS RSDSQLRSTK YENQISACKP EDDVGGQPIV PCGLIAWSLF NDTYALSRNN VSLAVNKKGI
201: AWKSDKEHKF GNKVFPKNFQ KGNITGGATL DPRIPLSEQE DLIVWMRTAA LPTFRKLYGK IESDLEMGDT IHVKLNNNYN TYSFNGKKKL VLSTTSWLGG
301: KNDFLGIAYL TVGGICFILA LAFTIMYLVK PRRLGDPSYL SWNRNPGGR
Arabidopsis Description
ALIS3ALA-interacting subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLK2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.