Factsheet for Zm00001d053778_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 4
endoplasmic reticulum 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d018045_P001
Zm00001d037221_P001
Zm00001d044836_P001
Zm00001d052256_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54320.1	Zm00001d018045_P001	AT3G47620.1	21798944
AT1G54320.1	Zm00001d037221_P001	AT3G47620.1	21798944
AT1G54320.1	Zm00001d044836_P001	AT3G47620.1	21798944
AT1G54320.1	Zm00001d052256_P001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015401_P001	Maize	plastid	91.12	91.12
TraesCS6B01G183800.1	Wheat	plasma membrane, plastid	81.66	81.9
TraesCS6D01G145600.2	Wheat	plasma membrane, plastid	81.38	81.61
TraesCS6A01G155600.1	Wheat	plasma membrane, plastid	80.8	81.03
Os02t0173800-01	Rice	plasma membrane	79.66	79.43
HORVU6Hr1G031530.3	Barley	plastid	79.08	78.41
Zm00001d036654_P002	Maize	endoplasmic reticulum, golgi, plasma membrane, plastid	76.22	76.22
GSMUA_Achr11P...	Banana	plasma membrane, plastid	73.07	72.65
GSMUA_Achr6P20180_001	Banana	plastid	71.06	70.66
CDY10503	Canola	plastid	68.48	68.88
CDY42411	Canola	plastid	68.19	68.59
AT1G54320.1	Thale cress	plastid	68.48	68.48
KRH43674	Soybean	plasma membrane, plastid	66.76	67.73
KRH13042	Soybean	plasma membrane	66.76	67.73
KRH44838	Soybean	plasma membrane, plastid	66.48	67.44
KRH13775	Soybean	plasma membrane, plastid	65.33	66.28
Bra001467.1-P	Field mustard	plastid	65.9	65.9
CDY08407	Canola	plasma membrane, plastid	64.76	65.89
Bra034736.1-P	Field mustard	plasma membrane, plastid	64.47	65.6
Solyc05g054800.1.1	Tomato	nucleus	65.62	65.43
AT3G12740.1	Thale cress	plastid	65.62	65.43
Bra030808.1-P	Field mustard	plastid	67.62	65.37
CDY42174	Canola	plastid	65.04	64.86
CDX79320	Canola	plasma membrane	62.46	63.93
Zm00001d027401_P001	Maize	plasma membrane	61.32	62.94
CDX67738	Canola	endoplasmic reticulum, extracellular, peroxisome	33.52	62.9
CDX67994	Canola	plasma membrane	61.32	62.57
AT1G79450.1	Thale cress	plasma membrane	62.75	62.57
Zm00001d038750_P006	Maize	plasma membrane	60.74	62.54
Bra003610.1-P	Field mustard	plasma membrane	61.03	62.28
CDX81761	Canola	plastid	62.18	62.0
AT1G16360.2	Thale cress	plastid	62.18	62.0
CDY51005	Canola	plastid	62.18	62.0
Zm00001d046948_P004	Maize	plasma membrane	72.21	60.0
VIT_19s0085g00850.t01	Wine grape	plastid	65.33	53.9
Zm00001d034351_P001	Maize	plasma membrane	51.58	52.17
Zm00001d021371_P001	Maize	plasma membrane	56.45	51.17
PGSC0003DMT400060190	Potato	plasma membrane	67.91	39.77
CDY00796	Canola	plastid	66.76	36.75
CDX73805	Canola	plastid	65.9	36.11
Bra026722.1-P	Field mustard	cytosol, golgi, plasma membrane	62.46	32.01

Protein Annotations

EnsemblPlants:Zm00001d053778_P001	EnsemblPlants:Zm00001d053778_T001	EnsemblPlantsGene:Zm00001d053778	GO:GO:0005575	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0051301	InterPro:CDC50/LEM3_fam	PANTHER:PTHR10926	PANTHER:PTHR10926:SF30
PFAM:PF03381	PIRSF:PIRSF015840	ProteinID:AQK60337.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002211D15
UniProt:K7UFC6	MapMan:5.8.2.1.1.2	MapMan:24.1.2.4.1.2	:	:	:

Description

Cell division control protein 50

Coordinates

chr4:+:240939248..240942799

Molecular Weight (calculated)

39229.1 Da

IEP (calculated)

9.966

GRAVY (calculated)

-0.351

Length

349 amino acids

Sequence
(BLAST)

001: MDSHAAGSSS GGSGDGGAQP RRSSRKPTYS KFTQQELPAC KPILTPKWVI SVFVLVGVIF VSIGIVSLRA SRQVVEIVDR YDDACVPAGV TDKLAYIRND
101: SIPKSCTRNL TITKDMKQPI FVYYQLDDFY QNHRRYVKSR NDAQLRDKSK ASDFTNCDPE AKTVDGKPIV PCGLIAWSLF NDTYKLIHNN VTLRVEKKDI
201: SWKSDRDHKF GSDVFPTNFQ KGPLKGGKTL DPSIPLSKQE DLIVWMRTAA LPTFRKLYGR IYVDLKENDT ITVQLDNNYN TYSFGGKKKL VLSTATWLGG
301: KNDFLGLAYL TVGGLCFFLA FAFTLLYLIK PRKMGDNSYL SWNRPPSGR

Best Arabidopsis Sequence Match ( AT1G54320.1 )
(BLAST)

001: MSSNTASSSA GAAGSGDSSA ARKNSKRPKY SKFTQQELPA CKPILTPGWV ISTFLIVSVI FIPLGVISLF ASQDVVEIVD RYDTECIPAP ARTNKVAYIQ
101: GDGDKVCNRD LKVTKRMKQP IYVYYQLENF YQNHRRYVKS RSDSQLRSTK YENQISACKP EDDVGGQPIV PCGLIAWSLF NDTYALSRNN VSLAVNKKGI
201: AWKSDKEHKF GNKVFPKNFQ KGNITGGATL DPRIPLSEQE DLIVWMRTAA LPTFRKLYGK IESDLEMGDT IHVKLNNNYN TYSFNGKKKL VLSTTSWLGG
301: KNDFLGIAYL TVGGICFILA LAFTIMYLVK PRRLGDPSYL SWNRNPGGR

Arabidopsis Description

ALIS3ALA-interacting subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLK2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.