CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

plastid 6
plasma membrane 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03466
KRH54542
KRH56919
KRH63357

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54320.1	KRH03466	AT3G47620.1	21798944
AT1G54320.1	KRH54542	AT3G47620.1	21798944
AT1G54320.1	KRH56919	AT3G47620.1	21798944
AT1G54320.1	KRH63357	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13775	Soybean	plasma membrane, plastid	95.06	95.06
KRH13042	Soybean	plasma membrane	79.65	79.65
KRH44838	Soybean	plasma membrane, plastid	77.33	77.33
CDY42411	Canola	plastid	75.58	74.93
CDY10503	Canola	plastid	75.0	74.35
AT1G54320.1	Thale cress	plastid	75.0	73.93
GSMUA_Achr6P20180_001	Banana	plastid	74.13	72.65
AT3G12740.1	Thale cress	plastid	73.84	72.57
CDY08407	Canola	plasma membrane, plastid	71.8	72.01
GSMUA_Achr11P...	Banana	plasma membrane, plastid	73.26	71.79
Bra034736.1-P	Field mustard	plasma membrane, plastid	71.51	71.72
Bra001467.1-P	Field mustard	plastid	72.67	71.63
Bra030808.1-P	Field mustard	plastid	75.0	71.47
CDY42174	Canola	plastid	72.38	71.14
Solyc05g054800.1.1	Tomato	nucleus	71.8	70.57
Os02t0173800-01	Rice	plasma membrane	71.22	70.0
TraesCS6B01G183800.1	Wheat	plasma membrane, plastid	70.35	69.54
TraesCS6D01G145600.2	Wheat	plasma membrane, plastid	70.35	69.54
EER88783	Sorghum	plasma membrane, plastid	70.93	69.32
TraesCS6A01G155600.1	Wheat	plasma membrane, plastid	70.06	69.25
Zm00001d036654_P002	Maize	endoplasmic reticulum, golgi, plasma membrane, plastid	69.77	68.77
CDX67738	Canola	endoplasmic reticulum, extracellular, peroxisome	36.92	68.28
AT1G79450.1	Thale cress	plasma membrane	69.19	68.0
TraesCS7B01G384400.1	Wheat	plasma membrane	69.19	67.81
TraesCS7D01G469100.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane, plastid	69.48	67.71
CDX79320	Canola	plasma membrane	66.86	67.45
EES06351	Sorghum	plastid	68.31	67.34
TraesCS7A01G482200.1	Wheat	plasma membrane	68.6	67.24
Zm00001d053778_P001	Maize	plasma membrane	67.73	66.76
Zm00001d015401_P001	Maize	plastid	67.44	66.48
HORVU6Hr1G031530.3	Barley	plastid	67.73	66.19
CDX67994	Canola	plasma membrane	65.41	65.79
Os06t0665000-01	Rice	plasma membrane	68.31	65.64
Bra003610.1-P	Field mustard	plasma membrane	65.12	65.5
AT1G16360.2	Thale cress	plastid	66.57	65.43
CDX81761	Canola	plastid	65.41	64.29
CDY51005	Canola	plastid	65.12	64.0
KRH09908	Soybean	plasma membrane	60.76	60.76
HORVU0Hr1G022300.1	Barley	endoplasmic reticulum	69.77	60.45
VIT_19s0085g00850.t01	Wine grape	plastid	73.26	59.57
KRG94866	Soybean	plasma membrane	57.27	56.45
KRH37801	Soybean	endoplasmic reticulum, golgi, plasma membrane, plastid	56.69	56.03
Zm00001d046948_P004	Maize	plasma membrane	65.12	53.33
KRH12833	Soybean	cytosol	38.95	52.76
KRH23423	Soybean	plasma membrane	54.94	49.61
KRH06673	Soybean	endoplasmic reticulum, golgi, plasma membrane	48.55	47.18
PGSC0003DMT400060190	Potato	plasma membrane	72.38	41.78
CDY00796	Canola	plastid	73.26	39.75
CDX73805	Canola	plastid	72.67	39.25
KRH12834	Soybean	plasma membrane	9.88	34.0
Bra026722.1-P	Field mustard	cytosol, golgi, plasma membrane	63.95	32.31

Protein Annotations

EMBL:ACUP02004878	EnsemblPlants:KRH43674	EnsemblPlantsGene:GLYMA_08G163800	EntrezGene:100793838	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:CDC50/LEM3_fam	PANTHER:PTHR10926	PANTHER:PTHR10926:SF45	PFAM:PF03381	PIRSF:PIRSF015840
ProteinID:KRH43674	ProteinID:KRH43674.1	ProteinID:KRH43675.1	TMHMM:TMhelix	UniParc:UPI00023383E9	UniProt:I1KTW4
MapMan:5.8.2.1.1.2	MapMan:24.1.2.4.1.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:12894289..12898874

Molecular Weight (calculated)

38482.1 Da

IEP (calculated)

9.998

GRAVY (calculated)

-0.294

Length

344 amino acids

Sequence
(BLAST)

001: MASSIAAGAG STDPTAARRN TKRPKYSKFT QQELPACKPI LTPRAVISAF LLVSIVFVPI GVASLIASRK VVEIVSRYES TCIPDGVTDK VAYIQSPADK
101: TCHISLPVHK HMKSPIYVYY QLDNFYQNHR RYVKSRSDEQ LRDHREENST NACKPEDIAN GKAIVPCGLI AWSLFNDTYS FSRDNKNLTV NKNGISWKSD
201: REHKFGKDVF PKNFQSSAIR GGATLNVSIP LSKQEDLIVW MRTAALPTFR KLYGKIEVDL NEGDNITVTL QNNYNTYSFN GKKKLVLSTT SWLGGKNDFL
301: GIAYLTVGGL CFFLALAFTI VYFVKPRQLG DPSYLSWNRN PGGR

Best Arabidopsis Sequence Match ( AT1G54320.1 )
(BLAST)

001: MSSNTASSSA GAAGSGDSSA ARKNSKRPKY SKFTQQELPA CKPILTPGWV ISTFLIVSVI FIPLGVISLF ASQDVVEIVD RYDTECIPAP ARTNKVAYIQ
101: GDGDKVCNRD LKVTKRMKQP IYVYYQLENF YQNHRRYVKS RSDSQLRSTK YENQISACKP EDDVGGQPIV PCGLIAWSLF NDTYALSRNN VSLAVNKKGI
201: AWKSDKEHKF GNKVFPKNFQ KGNITGGATL DPRIPLSEQE DLIVWMRTAA LPTFRKLYGK IESDLEMGDT IHVKLNNNYN TYSFNGKKKL VLSTTSWLGG
301: KNDFLGIAYL TVGGICFILA LAFTIMYLVK PRRLGDPSYL SWNRNPGGR

Arabidopsis Description

ALIS3ALA-interacting subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLK2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.