Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G384400.1 | Wheat | plasma membrane | 98.58 | 98.58 |
| TraesCS7D01G469100.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 96.87 | 96.32 |
| EER88783 | Sorghum | plasma membrane, plastid | 85.47 | 85.23 |
| Zm00001d036654_P002 | Maize | endoplasmic reticulum, golgi, plasma membrane, plastid | 84.05 | 84.53 |
| HORVU0Hr1G022300.1 | Barley | endoplasmic reticulum | 95.44 | 84.38 |
| Os06t0665000-01 | Rice | plasma membrane | 85.75 | 84.08 |
| TraesCS6A01G155600.1 | Wheat | plasma membrane, plastid | 75.78 | 76.44 |
| GSMUA_Achr6P20180_001 | Banana | plastid | 72.36 | 72.36 |
| GSMUA_Achr11P... | Banana | plasma membrane, plastid | 70.94 | 70.94 |
| KRH13042 | Soybean | plasma membrane | 68.09 | 69.48 |
| CDY10503 | Canola | plastid | 68.38 | 69.16 |
| CDY42411 | Canola | plastid | 68.09 | 68.88 |
| KRH43674 | Soybean | plasma membrane, plastid | 67.24 | 68.6 |
| KRH13775 | Soybean | plasma membrane, plastid | 67.24 | 68.6 |
| AT1G54320.1 | Thale cress | plastid | 66.67 | 67.05 |
| KRH44838 | Soybean | plasma membrane, plastid | 65.53 | 66.86 |
| AT3G12740.1 | Thale cress | plastid | 65.81 | 66.0 |
| CDX79320 | Canola | plasma membrane | 64.1 | 65.98 |
| Bra001467.1-P | Field mustard | plastid | 65.53 | 65.9 |
| AT1G16360.2 | Thale cress | plastid | 65.53 | 65.71 |
| Solyc05g054800.1.1 | Tomato | nucleus | 65.53 | 65.71 |
| Bra030808.1-P | Field mustard | plastid | 67.52 | 65.65 |
| Bra034736.1-P | Field mustard | plasma membrane, plastid | 64.1 | 65.6 |
| CDY08407 | Canola | plasma membrane, plastid | 64.1 | 65.6 |
| CDY42174 | Canola | plastid | 64.96 | 65.14 |
| AT1G79450.1 | Thale cress | plasma membrane | 64.96 | 65.14 |
| CDX67994 | Canola | plasma membrane | 63.25 | 64.91 |
| Zm00001d046948_P004 | Maize | plasma membrane | 77.49 | 64.76 |
| Bra003610.1-P | Field mustard | plasma membrane | 62.96 | 64.62 |
| CDY51005 | Canola | plastid | 63.82 | 64.0 |
| CDX81761 | Canola | plastid | 63.82 | 64.0 |
| CDX67738 | Canola | endoplasmic reticulum, extracellular, peroxisome | 32.19 | 60.75 |
| TraesCS5A01G519200.1 | Wheat | plasma membrane | 57.55 | 60.3 |
| TraesCS1A01G350000.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 58.12 | 58.45 |
| TraesCS5A01G423800.1 | Wheat | plasma membrane | 55.27 | 56.4 |
| VIT_19s0085g00850.t01 | Wine grape | plastid | 66.1 | 54.85 |
| TraesCS5A01G380500.1 | Wheat | plasma membrane | 50.43 | 49.3 |
| PGSC0003DMT400060190 | Potato | plasma membrane | 67.52 | 39.77 |
| CDY00796 | Canola | plastid | 66.1 | 36.59 |
| CDX73805 | Canola | plastid | 65.53 | 36.11 |
| Bra026722.1-P | Field mustard | cytosol, golgi, plasma membrane | 63.53 | 32.75 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G482200.1 | EnsemblPlantsGene:TraesCS7A01G482200 | GO:GO:0005575 | GO:GO:0016020 | InterPro:CDC50/LEM3_fam | PANTHER:PTHR10926 |
| PANTHER:PTHR10926:SF30 | PFAM:PF03381 | PIRSF:PIRSF015840 | SEG:seg | TMHMM:TMhelix | MapMan:5.8.2.1.1.2 |
| MapMan:24.1.2.4.1.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7A:-:674277099..674280650
Molecular Weight (calculated)
39638.5 Da
IEP (calculated)
9.790
GRAVY (calculated)
-0.312
Length
351 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAVAAGTSN GGSGADGDAA RRNNTRMPKY SKFTQQELPA CKPILTPKWV VSVFFLVGVV FVPVGVVSLL AAQDVVEIID RYDHACVPPN MTDNKLAYIQ
101: NETIPKDCTR TLTVTKEMKQ PIYVYYQLDN FYQNHRRYVK SRNDAQLRDY KKSNTTTSCD PERFTADGKP IVPCGLIAWS LFNDTYSFTR GKDNLTVDKK
201: DISWKSDREH KFANNVYPSN FQNGALIGGK KLNSSIPLSE QEDLIVWMRT AALPTFRKLY GRIYVDLKAN DTIIVRLSNN YNTYSFGGKK KLVLSTATWL
301: GGKNDFLGFA YLIVGGLCIF LAFAFTLLYL IKPRKLGDHN YLSWNRHPAG R
101: NETIPKDCTR TLTVTKEMKQ PIYVYYQLDN FYQNHRRYVK SRNDAQLRDY KKSNTTTSCD PERFTADGKP IVPCGLIAWS LFNDTYSFTR GKDNLTVDKK
201: DISWKSDREH KFANNVYPSN FQNGALIGGK KLNSSIPLSE QEDLIVWMRT AALPTFRKLY GRIYVDLKAN DTIIVRLSNN YNTYSFGGKK KLVLSTATWL
301: GGKNDFLGFA YLIVGGLCIF LAFAFTLLYL IKPRKLGDHN YLSWNRHPAG R
001: MSSNTASSSA GAAGSGDSSA ARKNSKRPKY SKFTQQELPA CKPILTPGWV ISTFLIVSVI FIPLGVISLF ASQDVVEIVD RYDTECIPAP ARTNKVAYIQ
101: GDGDKVCNRD LKVTKRMKQP IYVYYQLENF YQNHRRYVKS RSDSQLRSTK YENQISACKP EDDVGGQPIV PCGLIAWSLF NDTYALSRNN VSLAVNKKGI
201: AWKSDKEHKF GNKVFPKNFQ KGNITGGATL DPRIPLSEQE DLIVWMRTAA LPTFRKLYGK IESDLEMGDT IHVKLNNNYN TYSFNGKKKL VLSTTSWLGG
301: KNDFLGIAYL TVGGICFILA LAFTIMYLVK PRRLGDPSYL SWNRNPGGR
101: GDGDKVCNRD LKVTKRMKQP IYVYYQLENF YQNHRRYVKS RSDSQLRSTK YENQISACKP EDDVGGQPIV PCGLIAWSLF NDTYALSRNN VSLAVNKKGI
201: AWKSDKEHKF GNKVFPKNFQ KGNITGGATL DPRIPLSEQE DLIVWMRTAA LPTFRKLYGK IESDLEMGDT IHVKLNNNYN TYSFNGKKKL VLSTTSWLGG
301: KNDFLGIAYL TVGGICFILA LAFTIMYLVK PRRLGDPSYL SWNRNPGGR
Arabidopsis Description
ALIS3ALA-interacting subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLK2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.