Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- golgi 1
- mitochondrion 1
- plasma membrane 2
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS4D01G345100.1 | Wheat | plasma membrane | 98.51 | 99.1 |
TraesCS4B01G350400.1 | Wheat | plasma membrane | 97.91 | 98.5 |
HORVU4Hr1G085300.1 | Barley | golgi | 32.54 | 85.16 |
HORVU5Hr1G020720.6 | Barley | cytosol | 57.61 | 83.55 |
Os03t0120100-01 | Rice | plasma membrane | 77.91 | 76.76 |
Zm00001d027401_P001 | Maize | plasma membrane | 75.82 | 74.71 |
KXG40321 | Sorghum | plasma membrane | 74.03 | 73.37 |
TraesCS1A01G350000.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 68.06 | 65.33 |
GSMUA_Achr4P29460_001 | Banana | plasma membrane | 67.16 | 64.66 |
VIT_00s2279g00010.t01 | Wine grape | cytosol | 45.97 | 64.44 |
VIT_00s1667g00010.t01 | Wine grape | plasma membrane | 59.1 | 64.29 |
GSMUA_Achr2P11380_001 | Banana | plasma membrane | 65.67 | 63.77 |
TraesCS6A01G155600.1 | Wheat | plasma membrane, plastid | 62.09 | 59.77 |
TraesCS7A01G482200.1 | Wheat | plasma membrane | 60.3 | 57.55 |
KRG94866 | Soybean | plasma membrane | 58.51 | 56.16 |
Solyc02g036440.2.1 | Tomato | plasma membrane | 57.61 | 56.1 |
KRH09908 | Soybean | plasma membrane | 57.61 | 56.1 |
PGSC0003DMT400055262 | Potato | plasma membrane | 57.31 | 55.81 |
TraesCS5A01G423800.1 | Wheat | plasma membrane | 49.85 | 48.55 |
KRH23423 | Soybean | plasma membrane | 53.43 | 46.98 |
VIT_16s0115g00160.t01 | Wine grape | cytosol | 28.96 | 45.75 |
TraesCS5A01G380500.1 | Wheat | plasma membrane | 48.36 | 45.13 |
KRH06673 | Soybean | endoplasmic reticulum, golgi, plasma membrane | 47.16 | 44.63 |
Protein Annotations
EnsemblPlants:TraesCS5A01G519200.1 | EnsemblPlantsGene:TraesCS5A01G519200 | GO:GO:0005575 | GO:GO:0016020 | InterPro:CDC50/LEM3_fam | PANTHER:PTHR10926 |
PANTHER:PTHR10926:SF26 | PFAM:PF03381 | PIRSF:PIRSF015840 | TMHMM:TMhelix | MapMan:5.8.2.1.1.2 | MapMan:24.1.2.4.1.2 |
Description
No Description!
Coordinates
chr5A:+:680832676..680834903
Molecular Weight (calculated)
37557.3 Da
IEP (calculated)
9.713
GRAVY (calculated)
-0.207
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MQMYPLEMEG NSNPKTTNKP KYSKFTQQEL PACKPLLTPE IVIAAFALIG ALFVPIGLAS LHASRQVVEL VHRYDASCVP VDDKVGFIQN SRTDKTCTVT
101: MTVPKYMKSP IHVYYLIDGF YQNHRRYVRS RSDKQLRYKS AAHLTSDCVP EGETADHAPI VPCGLVAWSL FNDTYTVRVN GVVTQVNKKD IAWKSDKNNK
201: FGKNIYPSNF QKGRLIGGAT LNESIPLSEQ EDLIVWMRTA ALPTFRKLYG RIEKDINAND NVTVVIQNNY NTYSFGGSKA LVLSTASWIG GKNNFIGMAY
301: LTIGGLCLSL AMGFLVLYMV KRRNFADPSN LSWNR
101: MTVPKYMKSP IHVYYLIDGF YQNHRRYVRS RSDKQLRYKS AAHLTSDCVP EGETADHAPI VPCGLVAWSL FNDTYTVRVN GVVTQVNKKD IAWKSDKNNK
201: FGKNIYPSNF QKGRLIGGAT LNESIPLSEQ EDLIVWMRTA ALPTFRKLYG RIEKDINAND NVTVVIQNNY NTYSFGGSKA LVLSTASWIG GKNNFIGMAY
301: LTIGGLCLSL AMGFLVLYMV KRRNFADPSN LSWNR
001: MSTKKHNLLA NFASSDSRFT QQELPACKPI LTPKWVILTF LVSGVVFIPL GVICLFASQG VIEIVDRYDT DCIPLSSRDN KVRYIQGLED KRCNRTITVT
101: KTMKNPVYVY YQLENYYQNH RRYVKSRQDG QLRSPKDEHE TKSCAPEDTL GGQPIVPCGL VAWSLFNDTY DFTRNNQKLP VNKKDISWKS DRESKFGKNV
201: FPKNFQKGSL IGGKSLDQDI PLSEQEDLIV WMRTAALPTF RKLYGKIDTD LQAGDTIKVL LQNNYNTYSF NGKKKLVLST TSWLGGRNDF LGIAYLTVGS
301: ICLFLAVSFS VLYLAKPRQL GDPSYLSWNR SAGGGR
101: KTMKNPVYVY YQLENYYQNH RRYVKSRQDG QLRSPKDEHE TKSCAPEDTL GGQPIVPCGL VAWSLFNDTY DFTRNNQKLP VNKKDISWKS DRESKFGKNV
201: FPKNFQKGSL IGGKSLDQDI PLSEQEDLIV WMRTAALPTF RKLYGKIDTD LQAGDTIKVL LQNNYNTYSF NGKKKLVLST TSWLGGRNDF LGIAYLTVGS
301: ICLFLAVSFS VLYLAKPRQL GDPSYLSWNR SAGGGR
Arabidopsis Description
LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Source:TAIR;Acc:AT1G16360]
SUBAcon: [golgi]
SUBAcon: [golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.