Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 3
- plasma membrane 4
- extracellular 1
- golgi 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G390300.2 | Wheat | plasma membrane, plastid | 95.82 | 95.56 |
| TraesCS5B01G384100.1 | Wheat | plasma membrane | 94.71 | 91.89 |
| HORVU5Hr1G094000.6 | Barley | plasma membrane, plastid | 91.09 | 86.05 |
| Os09t0560600-01 | Rice | plasma membrane | 64.07 | 65.53 |
| EER97184 | Sorghum | plasma membrane | 63.79 | 63.79 |
| Zm00001d021371_P001 | Maize | plasma membrane | 64.62 | 60.26 |
| TraesCS7A01G482200.1 | Wheat | plasma membrane | 49.3 | 50.43 |
| TraesCS6A01G155600.1 | Wheat | plasma membrane, plastid | 47.35 | 48.85 |
| TraesCS5A01G519200.1 | Wheat | plasma membrane | 45.13 | 48.36 |
| TraesCS5A01G423800.1 | Wheat | plasma membrane | 45.4 | 47.38 |
| TraesCS1A01G350000.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 45.96 | 47.28 |
| Os09t0560700-01 | Rice | cytosol, peroxisome, plastid | 1.11 | 1.23 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G380500.1 | EnsemblPlantsGene:TraesCS5A01G380500 | GO:GO:0005575 | GO:GO:0016020 | InterPro:CDC50/LEM3_fam | PANTHER:PTHR10926 |
| PANTHER:PTHR10926:SF27 | PFAM:PF03381 | PIRSF:PIRSF015840 | SEG:seg | TMHMM:TMhelix | MapMan:5.8.2.1.1.2 |
| MapMan:24.1.2.4.1.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5A:-:577946602..577948762
Molecular Weight (calculated)
39550.3 Da
IEP (calculated)
10.253
GRAVY (calculated)
-0.105
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPANGAAAA AGPSSGSGRD GPPAATAAVK RNRPRYHAFT QQQLPACKPI MAPHMVIPIL VFVGLLFIPI GLACYAASNK IFEVVYRYDT KCVPKNMLHN
101: KVGFIQNASI NKTCTINLKI PNAMKRPIFV YYQLDRFYQN HRRYATSFNI AQLSDPKEEA NADIKDCKPE AYAGKGIPVV PCGLVAWSLF NDTYSFARRP
201: RRAGGIGGGE ALRVIKSGIS WRSERERLFG KHVYPKNFQN GSLVGGGRLD PRKPLSEQEE LMVWMRTAAM PRFRKLYGRV EADLDAGETV AVAVRNSYNT
301: YSFEGGKAVV LSTAGPLGGR NAFLGRAYLV TGMACLVLAL LLTLVCLFFP MTEEHLRLR
101: KVGFIQNASI NKTCTINLKI PNAMKRPIFV YYQLDRFYQN HRRYATSFNI AQLSDPKEEA NADIKDCKPE AYAGKGIPVV PCGLVAWSLF NDTYSFARRP
201: RRAGGIGGGE ALRVIKSGIS WRSERERLFG KHVYPKNFQN GSLVGGGRLD PRKPLSEQEE LMVWMRTAAM PRFRKLYGRV EADLDAGETV AVAVRNSYNT
301: YSFEGGKAVV LSTAGPLGGR NAFLGRAYLV TGMACLVLAL LLTLVCLFFP MTEEHLRLR
001: MSTKKHNLLA NFASSDSRFT QQELPACKPI LTPKWVILTF LVSGVVFIPL GVICLFASQG VIEIVDRYDT DCIPLSSRDN KVRYIQGLED KRCNRTITVT
101: KTMKNPVYVY YQLENYYQNH RRYVKSRQDG QLRSPKDEHE TKSCAPEDTL GGQPIVPCGL VAWSLFNDTY DFTRNNQKLP VNKKDISWKS DRESKFGKNV
201: FPKNFQKGSL IGGKSLDQDI PLSEQEDLIV WMRTAALPTF RKLYGKIDTD LQAGDTIKVL LQNNYNTYSF NGKKKLVLST TSWLGGRNDF LGIAYLTVGS
301: ICLFLAVSFS VLYLAKPRQL GDPSYLSWNR SAGGGR
101: KTMKNPVYVY YQLENYYQNH RRYVKSRQDG QLRSPKDEHE TKSCAPEDTL GGQPIVPCGL VAWSLFNDTY DFTRNNQKLP VNKKDISWKS DRESKFGKNV
201: FPKNFQKGSL IGGKSLDQDI PLSEQEDLIV WMRTAALPTF RKLYGKIDTD LQAGDTIKVL LQNNYNTYSF NGKKKLVLST TSWLGGRNDF LGIAYLTVGS
301: ICLFLAVSFS VLYLAKPRQL GDPSYLSWNR SAGGGR
Arabidopsis Description
LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Source:TAIR;Acc:AT1G16360]
SUBAcon: [golgi]
SUBAcon: [golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.