Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G380500.1 | Wheat | plasma membrane | 95.56 | 95.82 |
| TraesCS5B01G384100.1 | Wheat | plasma membrane | 93.89 | 91.35 |
| HORVU5Hr1G094000.6 | Barley | plasma membrane, plastid | 91.11 | 86.32 |
| Os09t0560600-01 | Rice | plasma membrane | 65.0 | 66.67 |
| EER97184 | Sorghum | plasma membrane | 65.28 | 65.46 |
| Zm00001d021371_P001 | Maize | plasma membrane | 65.28 | 61.04 |
| TraesCS7D01G469100.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 49.72 | 50.71 |
| TraesCS6D01G145600.2 | Wheat | plasma membrane, plastid | 47.5 | 49.14 |
| TraesCS4D01G345100.1 | Wheat | plasma membrane | 44.72 | 48.35 |
| TraesCS5D01G432300.1 | Wheat | plasma membrane | 45.28 | 47.38 |
| TraesCS1D01G352700.1 | Wheat | plasma membrane | 44.44 | 47.06 |
| Os09t0560700-01 | Rice | cytosol, peroxisome, plastid | 1.11 | 1.23 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G390300.2 | EnsemblPlantsGene:TraesCS5D01G390300 | GO:GO:0005575 | GO:GO:0016020 | InterPro:CDC50/LEM3_fam | ncoils:Coil |
| PANTHER:PTHR10926 | PANTHER:PTHR10926:SF27 | PFAM:PF03381 | PIRSF:PIRSF015840 | SEG:seg | TMHMM:TMhelix |
| MapMan:5.8.2.1.1.2 | MapMan:24.1.2.4.1.2 | : | : | : | : |
Description
No Description!
Coordinates
chr5D:-:458913259..458915416
Molecular Weight (calculated)
39732.5 Da
IEP (calculated)
10.218
GRAVY (calculated)
-0.095
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPVNGGAAA GPSSGSRDVH GPAAAATAAP KRNRPRYHAF TQQQLPACKP ILAPNMVIPI LVFVGLLFIP IGLACYAASN KVFEVVYRYD TKCVPKNMLH
101: NKVGYIQNAS INKTCTINLK IPNAMKRPIF IYYQLDRFYQ NHRRYATSFN IAQLSDPKEE ANADIKDCKP EAYAAKGIPV VPCGLVAWSL FNDTYSFARR
201: PRRAGGIGGV EALRVIKSGI SWRSERERLF GKHVYPKNFQ NGSLVGGGRL DPRKPLSEQE ELMVWMRTAA MPRFRKLYGR VEADLDAGET VAVAVRNSYN
301: SYSFEGGKAV VLSTAGPLGG RNAFLGRAYL VTGMACLVLA LLLTLVCLFF PMTEEHLRLR
101: NKVGYIQNAS INKTCTINLK IPNAMKRPIF IYYQLDRFYQ NHRRYATSFN IAQLSDPKEE ANADIKDCKP EAYAAKGIPV VPCGLVAWSL FNDTYSFARR
201: PRRAGGIGGV EALRVIKSGI SWRSERERLF GKHVYPKNFQ NGSLVGGGRL DPRKPLSEQE ELMVWMRTAA MPRFRKLYGR VEADLDAGET VAVAVRNSYN
301: SYSFEGGKAV VLSTAGPLGG RNAFLGRAYL VTGMACLVLA LLLTLVCLFF PMTEEHLRLR
001: MSTKKHNLLA NFASSDSRFT QQELPACKPI LTPKWVILTF LVSGVVFIPL GVICLFASQG VIEIVDRYDT DCIPLSSRDN KVRYIQGLED KRCNRTITVT
101: KTMKNPVYVY YQLENYYQNH RRYVKSRQDG QLRSPKDEHE TKSCAPEDTL GGQPIVPCGL VAWSLFNDTY DFTRNNQKLP VNKKDISWKS DRESKFGKNV
201: FPKNFQKGSL IGGKSLDQDI PLSEQEDLIV WMRTAALPTF RKLYGKIDTD LQAGDTIKVL LQNNYNTYSF NGKKKLVLST TSWLGGRNDF LGIAYLTVGS
301: ICLFLAVSFS VLYLAKPRQL GDPSYLSWNR SAGGGR
101: KTMKNPVYVY YQLENYYQNH RRYVKSRQDG QLRSPKDEHE TKSCAPEDTL GGQPIVPCGL VAWSLFNDTY DFTRNNQKLP VNKKDISWKS DRESKFGKNV
201: FPKNFQKGSL IGGKSLDQDI PLSEQEDLIV WMRTAALPTF RKLYGKIDTD LQAGDTIKVL LQNNYNTYSF NGKKKLVLST TSWLGGRNDF LGIAYLTVGS
301: ICLFLAVSFS VLYLAKPRQL GDPSYLSWNR SAGGGR
Arabidopsis Description
LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Source:TAIR;Acc:AT1G16360]
SUBAcon: [golgi]
SUBAcon: [golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.