Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- golgi 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G390300.2 | Wheat | plasma membrane, plastid | 86.32 | 91.11 |
| TraesCS5A01G380500.1 | Wheat | plasma membrane | 86.05 | 91.09 |
| TraesCS5B01G384100.1 | Wheat | plasma membrane | 84.47 | 86.76 |
| Os09t0560600-01 | Rice | plasma membrane | 60.26 | 65.24 |
| EER97184 | Sorghum | plasma membrane | 60.79 | 64.35 |
| Zm00001d021371_P001 | Maize | plasma membrane | 63.42 | 62.6 |
| HORVU6Hr1G031530.3 | Barley | plastid | 44.47 | 48.01 |
| HORVU5Hr1G020720.6 | Barley | cytosol | 27.37 | 45.02 |
| HORVU0Hr1G022300.1 | Barley | endoplasmic reticulum | 46.58 | 44.58 |
| HORVU4Hr1G085300.1 | Barley | golgi | 14.74 | 43.75 |
| HORVU5Hr1G103360.3 | Barley | golgi | 41.58 | 41.36 |
| HORVU1Hr1G081400.10 | Barley | cytosol, endoplasmic reticulum | 32.89 | 36.02 |
| HORVU6Hr1G093390.1 | Barley | cytosol, endoplasmic reticulum | 28.42 | 29.51 |
| Os09t0560700-01 | Rice | cytosol, peroxisome, plastid | 1.05 | 1.23 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G094000.6 | EnsemblPlantsGene:HORVU5Hr1G094000 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:CDC50/LEM3_fam |
| PANTHER:PTHR10926 | PANTHER:PTHR10926:SF27 | PFAM:PF03381 | PIRSF:PIRSF015840 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI000B462EF1 | UniProt:A0A287SB03 | MapMan:5.8.2.1.1.2 | MapMan:24.1.2.4.1.2 | : | : |
Description
ALA-interacting subunit [Source:UniProtKB/TrEMBL;Acc:A0A287SB03]
Coordinates
chrchr5H:+:593563369..593566223
Molecular Weight (calculated)
42253.6 Da
IEP (calculated)
10.345
GRAVY (calculated)
-0.167
Length
380 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPANRGAAA GPSSGGRHGP PAATAAPKRN RPRYHAFTQQ QLPACKPILA PNMVIPILVF VGLLFIPIGL ACYAASNKVF EVVYRYDTKC VPKNMLHNKV
101: GYIQNASINK TCVINLKIPN AMKRPIFVYY QLDRFYQNHR RYATSFNIAQ LGDPKEEVNP YIKDCKPEAY AGNGSPVVPC GLVAWSLFND TYSFARRPSG
201: GGGEALRVIK SGISWRSERE RLFGKHVYPK NFQNGTLVGG GRLDPRKPVR KLLFVPLDRR TYGDESMKTF GWGVQLSEQE ELMVWMRTAA MPRFRKLYGR
301: VEADLGAGET VAVAVRNRYN SYSFEGAKAV VLSTAGPLGG RNPFLGRAYL VTGMACLVLA LLLTIVCLFF PMKEEHLQLR
101: GYIQNASINK TCVINLKIPN AMKRPIFVYY QLDRFYQNHR RYATSFNIAQ LGDPKEEVNP YIKDCKPEAY AGNGSPVVPC GLVAWSLFND TYSFARRPSG
201: GGGEALRVIK SGISWRSERE RLFGKHVYPK NFQNGTLVGG GRLDPRKPVR KLLFVPLDRR TYGDESMKTF GWGVQLSEQE ELMVWMRTAA MPRFRKLYGR
301: VEADLGAGET VAVAVRNRYN SYSFEGAKAV VLSTAGPLGG RNPFLGRAYL VTGMACLVLA LLLTIVCLFF PMKEEHLQLR
001: MSTKKHNLLA NFASSDSRFT QQELPACKPI LTPKWVILTF LVSGVVFIPL GVICLFASQG VIEIVDRYDT DCIPLSSRDN KVRYIQGLED KRCNRTITVT
101: KTMKNPVYVY YQLENYYQNH RRYVKSRQDG QLRSPKDEHE TKSCAPEDTL GGQPIVPCGL VAWSLFNDTY DFTRNNQKLP VNKKDISWKS DRESKFGKNV
201: FPKNFQKGSL IGGKSLDQDI PLSEQEDLIV WMRTAALPTF RKLYGKIDTD LQAGDTIKVL LQNNYNTYSF NGKKKLVLST TSWLGGRNDF LGIAYLTVGS
301: ICLFLAVSFS VLYLAKPRQL GDPSYLSWNR SAGGGR
101: KTMKNPVYVY YQLENYYQNH RRYVKSRQDG QLRSPKDEHE TKSCAPEDTL GGQPIVPCGL VAWSLFNDTY DFTRNNQKLP VNKKDISWKS DRESKFGKNV
201: FPKNFQKGSL IGGKSLDQDI PLSEQEDLIV WMRTAALPTF RKLYGKIDTD LQAGDTIKVL LQNNYNTYSF NGKKKLVLST TSWLGGRNDF LGIAYLTVGS
301: ICLFLAVSFS VLYLAKPRQL GDPSYLSWNR SAGGGR
Arabidopsis Description
LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Source:TAIR;Acc:AT1G16360]
SUBAcon: [golgi]
SUBAcon: [golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.