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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 4
  • golgi 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:golgi, plasma membrane, plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:golgi
TargetP:plastid
WoLF PSORT:plasma membrane
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU6Hr1G075650.1
HORVU7Hr1G038130.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G54320.1 HORVU6Hr1G075650.1 AT3G47620.1 21798944
AT1G54320.1 HORVU7Hr1G038130.1 AT3G47620.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6D01G145600.2 Wheat plasma membrane, plastid 89.77 90.8
TraesCS6B01G183800.1 Wheat plasma membrane, plastid 89.49 90.52
TraesCS6A01G155600.1 Wheat plasma membrane, plastid 89.49 90.52
Zm00001d053778_P001 Maize plasma membrane 78.41 79.08
EES06351 Sorghum plastid 78.12 78.8
Zm00001d015401_P001 Maize plastid 77.56 78.22
Os02t0173800-01 Rice plasma membrane 77.27 77.71
GSMUA_Achr11P... Banana plasma membrane, plastid 71.59 71.79
GSMUA_Achr6P20180_001 Banana plastid 70.45 70.66
KRH13042 Soybean plasma membrane 67.61 69.19
KRH43674 Soybean plasma membrane, plastid 66.19 67.73
KRH44838 Soybean plasma membrane, plastid 66.19 67.73
KRH13775 Soybean plasma membrane, plastid 65.91 67.44
CDY10503 Canola plastid 65.06 65.99
CDY42411 Canola plastid 64.77 65.71
HORVU0Hr1G022300.1 Barley endoplasmic reticulum 73.3 64.99
Solyc05g054800.1.1 Tomato nucleus 64.2 64.57
AT1G54320.1 Thale cress plastid 63.35 63.9
CDY08407 Canola plasma membrane, plastid 61.93 63.56
Bra034736.1-P Field mustard plasma membrane, plastid 61.65 63.27
CDY42174 Canola plastid 62.5 62.86
Bra001467.1-P Field mustard plastid 62.22 62.75
Bra030808.1-P Field mustard plastid 64.2 62.6
AT3G12740.1 Thale cress plastid 62.22 62.57
AT1G79450.1 Thale cress plasma membrane 60.8 61.14
CDX79320 Canola plasma membrane 59.09 61.0
AT1G16360.2 Thale cress plastid 60.51 60.86
CDX67738 Canola endoplasmic reticulum, extracellular, peroxisome 31.82 60.22
CDY51005 Canola plastid 59.38 59.71
CDX81761 Canola plastid 59.38 59.71
CDX67994 Canola plasma membrane 57.95 59.65
HORVU4Hr1G085300.1 Barley golgi 21.59 59.38
Bra003610.1-P Field mustard plasma membrane 57.67 59.36
HORVU5Hr1G020720.6 Barley cytosol 37.78 57.58
VIT_19s0085g00850.t01 Wine grape plastid 67.9 56.5
HORVU5Hr1G103360.3 Barley golgi 50.28 46.34
HORVU5Hr1G094000.6 Barley plasma membrane, plastid 48.01 44.47
HORVU1Hr1G081400.10 Barley cytosol, endoplasmic reticulum 43.75 44.38
PGSC0003DMT400060190 Potato plasma membrane 66.76 39.43
CDY00796 Canola plastid 63.35 35.17
HORVU6Hr1G093390.1 Barley cytosol, endoplasmic reticulum 36.36 34.97
CDX73805 Canola plastid 62.78 34.69
Bra026722.1-P Field mustard cytosol, golgi, plasma membrane 58.81 30.4
Protein Annotations
EnsemblPlants:HORVU6Hr1G031530.3EnsemblPlantsGene:HORVU6Hr1G031530GO:GO:0005575GO:GO:0016020GO:GO:0016021InterPro:CDC50/LEM3_fam
PANTHER:PTHR10926PANTHER:PTHR10926:SF30PFAM:PF03381PIRSF:PIRSF015840SEG:segTMHMM:TMhelix
UniParc:UPI000B460D5BUniProt:A0A287TSY0MapMan:5.8.2.1.1.2MapMan:24.1.2.4.1.2::
Description
ALA-interacting subunit [Source:UniProtKB/TrEMBL;Acc:A0A287TSY0]
Coordinates
chrchr6H:-:134064051..134068626
Molecular Weight (calculated)
39333.2 Da
IEP (calculated)
9.776
GRAVY (calculated)
-0.241
Length
352 amino acids
Sequence
(BLAST)
001: MNSGDAAGSS SGGSGDGGAP RRASRKPKYS KFTQQELPAC KPILTPKWVI SVFILVGAIF VPIGVASLLS SQKVVEIVDR YDDACVPSNV TDKLAYIQNS
101: TIPKTCQRTL TVPKDMKQPI FVYYQLNNFY QNHRRYVKSR NDQQLRDASK ANETTLCDPE KTTKDGLAIV PCGLIAWSTF NDTYSFQHKS RNLSVDKNDI
201: SWKSDRDHKF GSDVFPKNFQ KGPLIGGKTL NESIPLSEQE DLIVWMRTAA LPTFRKLYGR IYVDLKENDT ITVTLDNNYN TYSFGGKKSL VLSTSTWLGG
301: KNDFLGLAYL TVGGLCFFLA FAFTLLYLIK PRLVAHKLLY TGHIKLTSFS LI
Best Arabidopsis Sequence Match ( AT3G12740.1 )
(BLAST)
001: MSSSNTPSSS AAAAGSIDSS AARRNSKRPK YSKFTQQELP ACKPILTPGW VISTFLIISV IFIPLGVISL FASQDVVEIV DRYDSACIPL SDRANKVAYI
101: QGTGNKSCTR TLIVPKRMKQ PIYVYYQLEN FYQNHRRYVK SRSDSQLRSV KDENQIDACK PEDDFGGQPI VPCGLIAWSL FNDTYVLSRN NQGLTVNKKG
201: IAWKSDKEHK FGKNVFPKNF QKGNLTGGAS LDPNKPLSDQ EDLIVWMRTA ALPTFRKLYG KIESDLEKGE NIQVTLQNNY NTYSFSGKKK LVLSTTSWLG
301: GKNDFLGIAY LTVGGICFVL ALAFTVMYLV KPRRLGDPTY LSWNRIPGGR
Arabidopsis Description
ALIS1ALA-interacting subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTW0]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.