Factsheet for GSMUA_Achr6P20180_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
endoplasmic reticulum 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P00500_001
GSMUA_Achr6P02720_001
GSMUA_Achr7P17990_001
GSMUA_Achr7P20990_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54320.1	GSMUA_Achr4P00500_001	AT3G47620.1	21798944
AT1G54320.1	GSMUA_Achr6P02720_001	AT3G47620.1	21798944
AT1G54320.1	GSMUA_Achr7P17990_001	AT3G47620.1	21798944
AT1G54320.1	GSMUA_Achr7P20990_001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	plasma membrane, plastid	82.91	82.91
TraesCS6B01G183800.1	Wheat	plasma membrane, plastid	74.64	75.29
TraesCS6D01G145600.2	Wheat	plasma membrane, plastid	74.36	75.0
TraesCS6A01G155600.1	Wheat	plasma membrane, plastid	74.07	74.71
KRH13775	Soybean	plasma membrane, plastid	72.65	74.13
KRH43674	Soybean	plasma membrane, plastid	72.65	74.13
Os02t0173800-01	Rice	plasma membrane	73.79	74.0
KRH13042	Soybean	plasma membrane	72.36	73.84
Solyc05g054800.1.1	Tomato	nucleus	72.65	72.86
KRH44838	Soybean	plasma membrane, plastid	71.23	72.67
CDY42411	Canola	plastid	71.79	72.62
Zm00001d036654_P002	Maize	endoplasmic reticulum, golgi, plasma membrane, plastid	72.08	72.49
EER88783	Sorghum	plasma membrane, plastid	72.65	72.44
TraesCS7A01G482200.1	Wheat	plasma membrane	72.36	72.36
TraesCS7B01G384400.1	Wheat	plasma membrane	72.36	72.36
CDY10503	Canola	plastid	71.51	72.33
Bra034736.1-P	Field mustard	plasma membrane, plastid	70.66	72.3
CDY08407	Canola	plasma membrane, plastid	70.66	72.3
AT3G12740.1	Thale cress	plastid	71.79	72.0
CDY42174	Canola	plastid	71.79	72.0
TraesCS7D01G469100.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane, plastid	72.36	71.95
Os06t0665000-01	Rice	plasma membrane	72.93	71.51
AT1G54320.1	Thale cress	plastid	70.94	71.35
Zm00001d053778_P001	Maize	plasma membrane	70.66	71.06
EES06351	Sorghum	plastid	70.37	70.77
CDX79320	Canola	plasma membrane	68.66	70.67
Zm00001d015401_P001	Maize	plastid	70.09	70.49
HORVU6Hr1G031530.3	Barley	plastid	70.66	70.45
Bra001467.1-P	Field mustard	plastid	69.8	70.2
CDX67994	Canola	plasma membrane	67.52	69.3
Bra030808.1-P	Field mustard	plastid	71.23	69.25
Bra003610.1-P	Field mustard	plasma membrane	67.24	69.01
GSMUA_Achr2P11380_001	Banana	plasma membrane	67.52	68.7
AT1G79450.1	Thale cress	plasma membrane	68.38	68.57
AT1G16360.2	Thale cress	plastid	67.81	68.0
GSMUA_Achr4P29460_001	Banana	plasma membrane	66.95	67.53
CDX81761	Canola	plastid	66.67	66.86
CDY51005	Canola	plastid	66.38	66.57
HORVU0Hr1G022300.1	Barley	endoplasmic reticulum	72.36	63.98
CDX67738	Canola	endoplasmic reticulum, extracellular, peroxisome	33.62	63.44
VIT_19s0085g00850.t01	Wine grape	plastid	71.51	59.34
GSMUA_Achr7P01140_001	Banana	plasma membrane	57.83	58.67
Zm00001d046948_P004	Maize	plasma membrane	67.52	56.43
PGSC0003DMT400060190	Potato	plasma membrane	73.79	43.46
CDY00796	Canola	plastid	69.8	38.64
CDX73805	Canola	plastid	69.8	38.46
Bra026722.1-P	Field mustard	cytosol, golgi, plasma membrane	64.96	33.48

Protein Annotations

EnsemblPlants:GSMUA_Achr6P20180_001	EnsemblPlants:GSMUA_Achr6T20180_001	EnsemblPlantsGene:GSMUA_Achr6G20180_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:CDC50/LEM3_fam	PANTHER:PTHR10926	PANTHER:PTHR10926:SF30	PFAM:PF03381	PIRSF:PIRSF015840	SEG:seg
TMHMM:TMhelix	UniParc:UPI0002952D50	UniProt:M0T8L6	MapMan:5.8.2.1.1.2	MapMan:24.1.2.4.1.2	:

Description

ALA-interacting subunit 1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G20180_001]

Coordinates

chr6:-:14633224..14639354

Molecular Weight (calculated)

39086.7 Da

IEP (calculated)

9.706

GRAVY (calculated)

-0.346

Length

351 amino acids

Sequence
(BLAST)

001: MNNVNGSVVG SSSGSGDGSA PRRNSKRPKY SRFTQQELPA CKPILTPKWV ISVFTLIGVV FVPIGVASLM ASNDVVEIVD RYDNVCVPLN MTNDKVAYIQ
101: NNETDKSCTR TLEVPKHMSQ PIYVYYQLDN FYQNHRRYVK SRNDAQLRKK SQENETSGCD PEKRTKDGAP IVPCGLIAWS LFNDTYIFAI GNKNLTVNKK
201: GISWKSDRDH KFGKDVLPKN FQSGPLIGGG TLDATKPLSE QEDLIVWMRT AALPTFRKLY GKIEQDLNAG DVITVTLENN YNTYSFSGKK KLVLSTSSWL
301: GGKNDFLGIA YLAVGGLCFF LAVAFTIVYL VKPRKLGDPS YLSWNRNPAG H

Best Arabidopsis Sequence Match ( AT3G12740.1 )
(BLAST)

001: MSSSNTPSSS AAAAGSIDSS AARRNSKRPK YSKFTQQELP ACKPILTPGW VISTFLIISV IFIPLGVISL FASQDVVEIV DRYDSACIPL SDRANKVAYI
101: QGTGNKSCTR TLIVPKRMKQ PIYVYYQLEN FYQNHRRYVK SRSDSQLRSV KDENQIDACK PEDDFGGQPI VPCGLIAWSL FNDTYVLSRN NQGLTVNKKG
201: IAWKSDKEHK FGKNVFPKNF QKGNLTGGAS LDPNKPLSDQ EDLIVWMRTA ALPTFRKLYG KIESDLEKGE NIQVTLQNNY NTYSFSGKKK LVLSTTSWLG
301: GKNDFLGIAY LTVGGICFVL ALAFTVMYLV KPRRLGDPTY LSWNRIPGGR

Arabidopsis Description

ALIS1ALA-interacting subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTW0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.