CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

nucleus 1
plastid 4
golgi 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03466
KRH54542
KRH56919
KRH63357

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54320.1	KRH03466	AT3G47620.1	21798944
AT1G54320.1	KRH54542	AT3G47620.1	21798944
AT1G54320.1	KRH56919	AT3G47620.1	21798944
AT1G54320.1	KRH63357	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13042	Soybean	plasma membrane	93.6	93.6
KRH13775	Soybean	plasma membrane, plastid	78.78	78.78
KRH43674	Soybean	plasma membrane, plastid	77.33	77.33
AT1G54320.1	Thale cress	plastid	73.55	72.49
CDY42411	Canola	plastid	72.09	71.47
GSMUA_Achr6P20180_001	Banana	plastid	72.67	71.23
GSMUA_Achr11P...	Banana	plasma membrane, plastid	72.38	70.94
CDY10503	Canola	plastid	71.51	70.89
AT3G12740.1	Thale cress	plastid	72.09	70.86
CDY08407	Canola	plasma membrane, plastid	70.35	70.55
Solyc05g054800.1.1	Tomato	nucleus	71.51	70.29
Bra034736.1-P	Field mustard	plasma membrane, plastid	70.06	70.26
TraesCS6D01G145600.2	Wheat	plasma membrane, plastid	70.93	70.11
TraesCS6B01G183800.1	Wheat	plasma membrane, plastid	70.93	70.11
CDY42174	Canola	plastid	71.22	70.0
TraesCS6A01G155600.1	Wheat	plasma membrane, plastid	70.64	69.83
CDX79320	Canola	plasma membrane	68.9	69.5
AT1G79450.1	Thale cress	plasma membrane	70.06	68.86
Bra003610.1-P	Field mustard	plasma membrane	68.31	68.71
Os02t0173800-01	Rice	plasma membrane	69.77	68.57
Bra001467.1-P	Field mustard	plastid	69.48	68.48
CDX67994	Canola	plasma membrane	68.02	68.42
Bra030808.1-P	Field mustard	plastid	71.51	68.14
EER88783	Sorghum	plasma membrane, plastid	68.02	66.48
Zm00001d053778_P001	Maize	plasma membrane	67.44	66.48
HORVU6Hr1G031530.3	Barley	plastid	67.73	66.19
Zm00001d015401_P001	Maize	plastid	67.15	66.19
EES06351	Sorghum	plastid	67.15	66.19
CDX81761	Canola	plastid	67.15	66.0
CDY51005	Canola	plastid	67.15	66.0
Zm00001d036654_P002	Maize	endoplasmic reticulum, golgi, plasma membrane, plastid	66.86	65.9
AT1G16360.2	Thale cress	plastid	66.86	65.71
TraesCS7A01G482200.1	Wheat	plasma membrane	66.86	65.53
TraesCS7B01G384400.1	Wheat	plasma membrane	66.86	65.53
TraesCS7D01G469100.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane, plastid	67.15	65.44
Os06t0665000-01	Rice	plasma membrane	66.57	63.97
CDX67738	Canola	endoplasmic reticulum, extracellular, peroxisome	33.72	62.37
VIT_19s0085g00850.t01	Wine grape	plastid	72.97	59.34
KRH09908	Soybean	plasma membrane	59.3	59.3
HORVU0Hr1G022300.1	Barley	endoplasmic reticulum	67.73	58.69
KRH37801	Soybean	endoplasmic reticulum, golgi, plasma membrane, plastid	57.27	56.61
KRG94866	Soybean	plasma membrane	56.4	55.59
KRH12833	Soybean	cytosol	39.53	53.54
Zm00001d046948_P004	Maize	plasma membrane	63.37	51.9
KRH23423	Soybean	plasma membrane	54.65	49.34
KRH06673	Soybean	endoplasmic reticulum, golgi, plasma membrane	47.38	46.05
PGSC0003DMT400060190	Potato	plasma membrane	73.55	42.45
CDY00796	Canola	plastid	70.06	38.01
CDX73805	Canola	plastid	69.48	37.52
KRH12834	Soybean	plasma membrane	10.47	36.0
Bra026722.1-P	Field mustard	cytosol, golgi, plasma membrane	65.41	33.04

Protein Annotations

EMBL:ACUP02004967	EnsemblPlants:KRH44838	EnsemblPlantsGene:GLYMA_08G234600	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:CDC50/LEM3_fam	PANTHER:PTHR10926	PANTHER:PTHR10926:SF45	PFAM:PF03381	PIRSF:PIRSF015840	ProteinID:KRH44838
ProteinID:KRH44838.1	ProteinID:KRH44839.1	TMHMM:TMhelix	UniParc:UPI0002337C99	UniProt:I1KW46	MapMan:5.8.2.1.1.2
MapMan:24.1.2.4.1.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:19675872..19682845

Molecular Weight (calculated)

38324.5 Da

IEP (calculated)

9.443

GRAVY (calculated)

-0.358

Length

344 amino acids

Sequence
(BLAST)

001: MSTSDAGGAG SNDSNATRRQ SKRPKYSKFT QQELPACKPI LTPRAVISAF LIVTIVFIPI GVASLIASHD VVEIIDRYDS HCIPSNVTDK VAYIQTPGEK
101: PCNRQLTVEK RMKSPIYVYY QLDNFYQNHR RYVKSRNDDQ LRDSGKASSV SGCEPENNVN GMAILPCGLI AWSLFNDTYS FSRNSNNLTV NKTGISWKSD
201: RDHKFGSDVF PKNFQNGPII GGGGLDENVP LSQHEDLIVW MRTAALPTFR KLYGKIEVDL EKGDVINVNL HNNYNTYSFN GKKKLVLSTT SWLGGKNDFL
301: GIAYLTVGGL SFFLSMAFTV VYLVKPRQLG DPSYLSWNRS PGGH

Best Arabidopsis Sequence Match ( AT3G12740.1 )
(BLAST)

001: MSSSNTPSSS AAAAGSIDSS AARRNSKRPK YSKFTQQELP ACKPILTPGW VISTFLIISV IFIPLGVISL FASQDVVEIV DRYDSACIPL SDRANKVAYI
101: QGTGNKSCTR TLIVPKRMKQ PIYVYYQLEN FYQNHRRYVK SRSDSQLRSV KDENQIDACK PEDDFGGQPI VPCGLIAWSL FNDTYVLSRN NQGLTVNKKG
201: IAWKSDKEHK FGKNVFPKNF QKGNLTGGAS LDPNKPLSDQ EDLIVWMRTA ALPTFRKLYG KIESDLEKGE NIQVTLQNNY NTYSFSGKKK LVLSTTSWLG
301: GKNDFLGIAY LTVGGICFVL ALAFTVMYLV KPRRLGDPTY LSWNRIPGGR

Arabidopsis Description

ALIS1ALA-interacting subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTW0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.