Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, plasma membrane, peroxisome
Predictor Summary:
Predictor Summary:
- plastid 1
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 2
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G384400.1 | Wheat | plasma membrane | 97.45 | 98.01 |
| TraesCS7A01G482200.1 | Wheat | plasma membrane | 96.32 | 96.87 |
| EER88783 | Sorghum | plasma membrane, plastid | 85.55 | 85.8 |
| HORVU0Hr1G022300.1 | Barley | endoplasmic reticulum | 95.75 | 85.14 |
| Zm00001d036654_P002 | Maize | endoplasmic reticulum, golgi, plasma membrane, plastid | 84.14 | 85.1 |
| Os06t0665000-01 | Rice | plasma membrane | 85.84 | 84.64 |
| TraesCS6D01G145600.2 | Wheat | plasma membrane, plastid | 75.64 | 76.72 |
| GSMUA_Achr6P20180_001 | Banana | plastid | 71.95 | 72.36 |
| GSMUA_Achr11P... | Banana | plasma membrane, plastid | 71.39 | 71.79 |
| KRH13042 | Soybean | plasma membrane | 67.99 | 69.77 |
| KRH43674 | Soybean | plasma membrane, plastid | 67.71 | 69.48 |
| KRH13775 | Soybean | plasma membrane, plastid | 67.42 | 69.19 |
| CDY10503 | Canola | plastid | 67.42 | 68.59 |
| CDY42411 | Canola | plastid | 66.86 | 68.01 |
| KRH44838 | Soybean | plasma membrane, plastid | 65.44 | 67.15 |
| AT1G54320.1 | Thale cress | plastid | 66.29 | 67.05 |
| Solyc05g054800.1.1 | Tomato | nucleus | 66.01 | 66.57 |
| AT1G16360.2 | Thale cress | plastid | 65.44 | 66.0 |
| AT3G12740.1 | Thale cress | plastid | 65.44 | 66.0 |
| CDX79320 | Canola | plasma membrane | 63.46 | 65.69 |
| Bra001467.1-P | Field mustard | plastid | 64.87 | 65.62 |
| CDY08407 | Canola | plasma membrane, plastid | 63.74 | 65.6 |
| Bra034736.1-P | Field mustard | plasma membrane, plastid | 63.74 | 65.6 |
| Zm00001d046948_P004 | Maize | plasma membrane | 77.62 | 65.24 |
| CDY42174 | Canola | plastid | 64.59 | 65.14 |
| AT1G79450.1 | Thale cress | plasma membrane | 64.59 | 65.14 |
| Bra030808.1-P | Field mustard | plastid | 66.29 | 64.82 |
| CDX67994 | Canola | plasma membrane | 62.61 | 64.62 |
| Bra003610.1-P | Field mustard | plasma membrane | 62.32 | 64.33 |
| CDX81761 | Canola | plastid | 63.74 | 64.29 |
| CDY51005 | Canola | plastid | 63.74 | 64.29 |
| TraesCS4D01G345100.1 | Wheat | plasma membrane | 57.79 | 61.26 |
| TraesCS1D01G352700.1 | Wheat | plasma membrane | 58.92 | 61.18 |
| CDX67738 | Canola | endoplasmic reticulum, extracellular, peroxisome | 32.01 | 60.75 |
| TraesCS5D01G432300.1 | Wheat | plasma membrane | 56.09 | 57.56 |
| VIT_19s0085g00850.t01 | Wine grape | plastid | 66.01 | 55.08 |
| TraesCS5D01G390300.2 | Wheat | plasma membrane, plastid | 50.71 | 49.72 |
| PGSC0003DMT400060190 | Potato | plasma membrane | 67.71 | 40.1 |
| CDY00796 | Canola | plastid | 65.44 | 36.44 |
| CDX73805 | Canola | plastid | 64.87 | 35.95 |
| Bra026722.1-P | Field mustard | cytosol, golgi, plasma membrane | 63.17 | 32.75 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G469100.1 | EnsemblPlantsGene:TraesCS7D01G469100 | GO:GO:0005575 | GO:GO:0016020 | InterPro:CDC50/LEM3_fam | PANTHER:PTHR10926 |
| PANTHER:PTHR10926:SF30 | PFAM:PF03381 | PIRSF:PIRSF015840 | SEG:seg | TMHMM:TMhelix | MapMan:5.8.2.1.1.2 |
| MapMan:24.1.2.4.1.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7D:-:582305100..582308780
Molecular Weight (calculated)
39892.0 Da
IEP (calculated)
9.958
GRAVY (calculated)
-0.320
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MMMDGSAAGT SNGGSGADGD AARRNNTRMP KYSKFTQQEL PACKPILTPK WVVSVFFLVG VVFVPVGVVS LLAAQDVVEI IDRYDHACVP PNMTDNKLAY
101: IKNDTISKEC TRILTVTKEM KQPIYVYYQL DNFYQNHRRY VKSRNDAQLR DYKKSNTTTS CDPERFTADG KPIVPCGLIA WSLFNDTYSF TRGKENLTVN
201: KKDISWKSDR EHKFAKNVYP SNFQNGALIG GKKLNSSIPL SEQEDLIVWM RTAALPTFRK LYGRIYVDLK ANDTITVRLS NNYNTYSFGG KKKLVLSTAT
301: WLGGKNDFLG FAYLIVGGLC IFLAFAFTLL YLIKPRKLGD HNYLSWNRHP AGR
101: IKNDTISKEC TRILTVTKEM KQPIYVYYQL DNFYQNHRRY VKSRNDAQLR DYKKSNTTTS CDPERFTADG KPIVPCGLIA WSLFNDTYSF TRGKENLTVN
201: KKDISWKSDR EHKFAKNVYP SNFQNGALIG GKKLNSSIPL SEQEDLIVWM RTAALPTFRK LYGRIYVDLK ANDTITVRLS NNYNTYSFGG KKKLVLSTAT
301: WLGGKNDFLG FAYLIVGGLC IFLAFAFTLL YLIKPRKLGD HNYLSWNRHP AGR
001: MSSNTASSSA GAAGSGDSSA ARKNSKRPKY SKFTQQELPA CKPILTPGWV ISTFLIVSVI FIPLGVISLF ASQDVVEIVD RYDTECIPAP ARTNKVAYIQ
101: GDGDKVCNRD LKVTKRMKQP IYVYYQLENF YQNHRRYVKS RSDSQLRSTK YENQISACKP EDDVGGQPIV PCGLIAWSLF NDTYALSRNN VSLAVNKKGI
201: AWKSDKEHKF GNKVFPKNFQ KGNITGGATL DPRIPLSEQE DLIVWMRTAA LPTFRKLYGK IESDLEMGDT IHVKLNNNYN TYSFNGKKKL VLSTTSWLGG
301: KNDFLGIAYL TVGGICFILA LAFTIMYLVK PRRLGDPSYL SWNRNPGGR
101: GDGDKVCNRD LKVTKRMKQP IYVYYQLENF YQNHRRYVKS RSDSQLRSTK YENQISACKP EDDVGGQPIV PCGLIAWSLF NDTYALSRNN VSLAVNKKGI
201: AWKSDKEHKF GNKVFPKNFQ KGNITGGATL DPRIPLSEQE DLIVWMRTAA LPTFRKLYGK IESDLEMGDT IHVKLNNNYN TYSFNGKKKL VLSTTSWLGG
301: KNDFLGIAYL TVGGICFILA LAFTIMYLVK PRRLGDPSYL SWNRNPGGR
Arabidopsis Description
ALIS3ALA-interacting subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLK2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.