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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 1
  • golgi 2
  • extracellular 1
  • plasma membrane 3
  • endoplasmic reticulum 1
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:plastid, secretory
ChloroP:plastid
MultiLoc:golgi
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d018045_P001
Zm00001d037221_P001
Zm00001d044836_P001
Zm00001d052256_P001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G54320.1 Zm00001d018045_P001 AT3G47620.1 21798944
AT1G54320.1 Zm00001d037221_P001 AT3G47620.1 21798944
AT1G54320.1 Zm00001d044836_P001 AT3G47620.1 21798944
AT1G54320.1 Zm00001d052256_P001 AT3G47620.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d036654_P002 Maize endoplasmic reticulum, golgi, plasma membrane, plastid 72.86 87.68
EER88783 Sorghum plasma membrane, plastid 73.33 87.5
TraesCS7B01G384400.1 Wheat plasma membrane 65.24 78.06
TraesCS7D01G469100.1 Wheat endoplasmic reticulum, peroxisome, plasma membrane, plastid 65.24 77.62
TraesCS7A01G482200.1 Wheat plasma membrane 64.76 77.49
Os06t0665000-01 Rice plasma membrane 65.95 77.37
Zm00001d053778_P001 Maize plasma membrane 60.0 72.21
Zm00001d015401_P001 Maize plastid 59.29 71.35
HORVU0Hr1G022300.1 Barley endoplasmic reticulum 65.24 69.02
GSMUA_Achr11P... Banana plasma membrane, plastid 57.62 68.95
GSMUA_Achr6P20180_001 Banana plastid 56.43 67.52
CDY10503 Canola plastid 54.52 65.99
KRH13042 Soybean plasma membrane 53.57 65.41
CDY42411 Canola plastid 53.81 65.13
KRH43674 Soybean plasma membrane, plastid 53.33 65.12
KRH13775 Soybean plasma membrane, plastid 52.86 64.53
AT1G54320.1 Thale cress plastid 53.57 64.47
KRH44838 Soybean plasma membrane, plastid 51.9 63.37
Bra001467.1-P Field mustard plastid 52.38 63.04
AT3G12740.1 Thale cress plastid 52.38 62.86
Solyc05g054800.1.1 Tomato nucleus 52.38 62.86
CDY08407 Canola plasma membrane, plastid 51.19 62.68
Bra034736.1-P Field mustard plasma membrane, plastid 51.19 62.68
CDX67738 Canola endoplasmic reticulum, extracellular, peroxisome 27.62 62.37
CDX79320 Canola plasma membrane 50.48 62.17
Bra030808.1-P Field mustard plastid 53.33 62.05
CDY42174 Canola plastid 51.19 61.43
CDX67994 Canola plasma membrane 49.76 61.11
Bra003610.1-P Field mustard plasma membrane 49.52 60.82
AT1G16360.2 Thale cress plastid 50.0 60.0
AT1G79450.1 Thale cress plasma membrane 50.0 60.0
Zm00001d027401_P001 Maize plasma membrane 47.62 58.82
CDX81761 Canola plastid 48.81 58.57
CDY51005 Canola plastid 48.81 58.57
Zm00001d038750_P006 Maize plasma membrane 46.67 57.82
VIT_19s0085g00850.t01 Wine grape plastid 55.95 55.56
Zm00001d034351_P001 Maize plasma membrane 44.52 54.2
Zm00001d021371_P001 Maize plasma membrane 46.67 50.91
PGSC0003DMT400060190 Potato plasma membrane 54.05 38.09
CDY00796 Canola plastid 53.1 35.17
CDX73805 Canola plastid 52.62 34.69
Bra026722.1-P Field mustard cytosol, golgi, plasma membrane 48.81 30.1
Protein Annotations
EntrezGene:100283092MapMan:24.1.2.4.1.2MapMan:5.8.2.1.1.2UniProt:A0A1D6P5L2ProteinID:AQL05233.1ProteinID:AQL05234.1
InterPro:CDC50/LEM3_famGO:GO:0005575GO:GO:0008150GO:GO:0009987GO:GO:0016020GO:GO:0016021
GO:GO:0051301PFAM:PF03381PANTHER:PTHR10926PANTHER:PTHR10926:SF30TMHMM:TMhelixUniParc:UPI0008434C70
EnsemblPlantsGene:Zm00001d046948EnsemblPlants:Zm00001d046948_P004EnsemblPlants:Zm00001d046948_T004SEG:seg::
Description
Cell division control protein 50
Coordinates
chr9:+:112329353..112340443
Molecular Weight (calculated)
47603.5 Da
IEP (calculated)
9.274
GRAVY (calculated)
-0.247
Length
420 amino acids
Sequence
(BLAST)
001: MRPPGARPGG TPGCPNSRRK PVNVVGTQQY SKFTQQELPA CKPILTPKWV VSVFLIVGVI FVPIGVVSLL AARDVVEIID RYDEACVPVN MTENKLAYIQ
101: NETISKECIR NLTVTKYMKQ PIFVYYELDN FYQNHRRYVK SRNDAQLRDA SKANQTSACE PEKTTANGQP IVPCGLIAWS LFNDTYNFTR GNENLTVDKK
201: DISWKSDREH KFGKDVYPSN FQNGALKGGA TLNPKIPLSE QEDLIVWMRT AALPTFRKLY GRLYFDLKEN DTITVRLNNN YNTYSFGGKK KLVLSTATWL
301: GGKNDFLGFA YLIVGGLCIF LAFAFTLLYF VKPSPFYLCI FYCQLKVEVA LRAKAVGCVG NWETTTTYPG TDARMFRNTK CPYYSKCSLY EMKCSEPEMS
401: MGISKHGSGK NFMYIFYEGV
Best Arabidopsis Sequence Match ( AT1G16360.4 )
(BLAST)
001: MSTKKHNLLA NFASSDSRFT QQELPACKPI LTPKWVILTF LVSGVVFIPL GVICLFASQG VIEIVDRYDT DCIPLSSRDN KVRYIQGLED KRCNRTITVT
101: KTMKNPVYVY YQLENYYQNH RRYVKSRQDG QLRSPKDEHE TKSCAPEDTL GGQPIVPCGL VAWSLFNDTY DFTRNNQKLP VNKKDISWKS DRESKFGKNV
201: FPKNFQKGSL IGGKSLDQDI PLSEQEDLIV WMRTAALPTF RKLYGKIDTD LQAGDTIKVL LQNNYNTYSF NGKKKLVLST TSWLGGRNDF LGIAYLTVGS
301: ICLFLAVSFS VLYLAKPRYI ITFSTMPHFV RKMHWFLRL
Arabidopsis Description
LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Source:TAIR;Acc:AT1G16360]
SUBAcon: [golgi]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.