Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G54320.1 | CDY24170 | AT3G47620.1 | 21798944 |
| AT1G54320.1 | CDY36943 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42411 | Canola | plastid | 97.98 | 97.98 |
| Bra030808.1-P | Field mustard | plastid | 97.41 | 93.63 |
| AT1G54320.1 | Thale cress | plastid | 91.35 | 90.83 |
| CDY08407 | Canola | plasma membrane, plastid | 83.0 | 83.97 |
| CDY42174 | Canola | plastid | 84.15 | 83.43 |
| CDX67738 | Canola | endoplasmic reticulum, extracellular, peroxisome | 42.94 | 80.11 |
| KRH43674 | Soybean | plasma membrane, plastid | 74.35 | 75.0 |
| KRH13775 | Soybean | plasma membrane, plastid | 73.78 | 74.42 |
| KRH13042 | Soybean | plasma membrane | 73.49 | 74.13 |
| CDX79320 | Canola | plasma membrane | 72.62 | 73.9 |
| CDX81761 | Canola | plastid | 73.78 | 73.14 |
| CDY51005 | Canola | plastid | 73.49 | 72.86 |
| CDX67994 | Canola | plasma membrane | 71.76 | 72.81 |
| KRH44838 | Soybean | plasma membrane, plastid | 70.89 | 71.51 |
| GSMUA_Achr6P20180_001 | Banana | plastid | 72.33 | 71.51 |
| Zm00001d015401_P001 | Maize | plastid | 70.61 | 70.2 |
| GSMUA_Achr11P... | Banana | plasma membrane, plastid | 70.89 | 70.09 |
| Os02t0173800-01 | Rice | plasma membrane | 70.61 | 70.0 |
| Zm00001d036654_P002 | Maize | endoplasmic reticulum, golgi, plasma membrane, plastid | 69.74 | 69.34 |
| EER88783 | Sorghum | plasma membrane, plastid | 70.03 | 69.03 |
| TraesCS6D01G145600.2 | Wheat | plasma membrane, plastid | 69.16 | 68.97 |
| EES06351 | Sorghum | plastid | 69.16 | 68.77 |
| TraesCS6A01G155600.1 | Wheat | plasma membrane, plastid | 68.88 | 68.68 |
| TraesCS6B01G183800.1 | Wheat | plasma membrane, plastid | 68.88 | 68.68 |
| Zm00001d053778_P001 | Maize | plasma membrane | 68.88 | 68.48 |
| TraesCS7A01G482200.1 | Wheat | plasma membrane | 69.16 | 68.38 |
| Solyc05g054800.1.1 | Tomato | nucleus | 68.59 | 68.0 |
| TraesCS7B01G384400.1 | Wheat | plasma membrane | 68.59 | 67.81 |
| Os06t0665000-01 | Rice | plasma membrane | 69.74 | 67.6 |
| TraesCS7D01G469100.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 68.59 | 67.42 |
| HORVU6Hr1G031530.3 | Barley | plastid | 65.99 | 65.06 |
| VIT_19s0085g00850.t01 | Wine grape | plastid | 74.35 | 60.99 |
| HORVU0Hr1G022300.1 | Barley | endoplasmic reticulum | 69.45 | 60.71 |
| CDY35146 | Canola | plasma membrane | 54.47 | 55.26 |
| CDY03242 | Canola | golgi, peroxisome, plasma membrane, plastid | 53.89 | 54.68 |
| Zm00001d046948_P004 | Maize | plasma membrane | 65.99 | 54.52 |
| CDX77634 | Canola | golgi | 17.0 | 52.21 |
| CDY00796 | Canola | plastid | 84.15 | 46.06 |
| CDX73805 | Canola | plastid | 84.44 | 46.0 |
| PGSC0003DMT400060190 | Potato | plasma membrane | 70.32 | 40.94 |
Protein Annotations
| EnsemblPlants:CDY10503 | EnsemblPlantsGene:GSBRNA2T00032450001 | GO:A0A078FEH3 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:CDC50/LEM3_fam | PANTHER:PTHR10926 | PANTHER:PTHR10926:SF45 | PFAM:PF03381 | PIRSF:PIRSF015840 | ProteinID:CDY10503 |
| ProteinID:CDY10503.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EB728F | UniProt:A0A078FEH3 | MapMan:5.8.2.1.1.2 |
| MapMan:24.1.2.4.1.2 | : | : | : | : | : |
Description
BnaC03g71110DBnaC03g71110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FEH3]
Coordinates
chrLK032004:+:17600..19809
Molecular Weight (calculated)
38674.2 Da
IEP (calculated)
9.954
GRAVY (calculated)
-0.363
Length
347 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSNTASSSG GSGDSSAARK NSKRPKYSKF TQQELPACKP ILTPGWVIST FLIVSVIFIP LGVISLFASQ DVVEIVDRYD NDCIPAPART NKVAFIQGDA
101: PKACNRTLTV TKRMKQPIYV YYQLDNFYQN HRRYVKSRSD SQLRSPKFEN QISACKPEDD AGGQPIVPCG LIAWSLFNDT YTLSRNNTPL AVNKKDIAWK
201: SDKEHKFGNK VFPKNFQKGN LTGGATLNPD IPLSEQEDLI VWMRTAALPT FRKLYGKIET DLDNGDTIQV TLQNNYNTYS FSGKKKLVLS TTSWLGGKND
301: FLGIAYLTVG GICFFLALAF TIMYLVKPRR LGDPSYLSWN RNPGGGR
101: PKACNRTLTV TKRMKQPIYV YYQLDNFYQN HRRYVKSRSD SQLRSPKFEN QISACKPEDD AGGQPIVPCG LIAWSLFNDT YTLSRNNTPL AVNKKDIAWK
201: SDKEHKFGNK VFPKNFQKGN LTGGATLNPD IPLSEQEDLI VWMRTAALPT FRKLYGKIET DLDNGDTIQV TLQNNYNTYS FSGKKKLVLS TTSWLGGKND
301: FLGIAYLTVG GICFFLALAF TIMYLVKPRR LGDPSYLSWN RNPGGGR
001: MSSNTASSSA GAAGSGDSSA ARKNSKRPKY SKFTQQELPA CKPILTPGWV ISTFLIVSVI FIPLGVISLF ASQDVVEIVD RYDTECIPAP ARTNKVAYIQ
101: GDGDKVCNRD LKVTKRMKQP IYVYYQLENF YQNHRRYVKS RSDSQLRSTK YENQISACKP EDDVGGQPIV PCGLIAWSLF NDTYALSRNN VSLAVNKKGI
201: AWKSDKEHKF GNKVFPKNFQ KGNITGGATL DPRIPLSEQE DLIVWMRTAA LPTFRKLYGK IESDLEMGDT IHVKLNNNYN TYSFNGKKKL VLSTTSWLGG
301: KNDFLGIAYL TVGGICFILA LAFTIMYLVK PRRLGDPSYL SWNRNPGGR
101: GDGDKVCNRD LKVTKRMKQP IYVYYQLENF YQNHRRYVKS RSDSQLRSTK YENQISACKP EDDVGGQPIV PCGLIAWSLF NDTYALSRNN VSLAVNKKGI
201: AWKSDKEHKF GNKVFPKNFQ KGNITGGATL DPRIPLSEQE DLIVWMRTAA LPTFRKLYGK IESDLEMGDT IHVKLNNNYN TYSFNGKKKL VLSTTSWLGG
301: KNDFLGIAYL TVGGICFILA LAFTIMYLVK PRRLGDPSYL SWNRNPGGR
Arabidopsis Description
ALIS3ALA-interacting subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLK2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.