CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 1
golgi 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, golgi, plastid
BaCelLo:	plastid
MultiLoc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G46150.1	Thale cress	golgi, peroxisome, plasma membrane	81.42	26.82
CDY35146	Canola	plasma membrane	79.65	26.32
CDY03242	Canola	golgi, peroxisome, plasma membrane, plastid	77.88	25.73
CDX67738	Canola	endoplasmic reticulum, extracellular, peroxisome	41.59	25.27
VIT_10s0003g03980.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	63.72	21.75
KRH12833	Soybean	cytosol	48.67	21.65
KRH37801	Soybean	endoplasmic reticulum, golgi, plasma membrane, plastid	65.49	21.26
Zm00001d034351_P001	Maize	plasma membrane	58.41	19.13
KXG37410	Sorghum	plasma membrane	55.75	18.26
TraesCS5D01G432300.1	Wheat	plasma membrane	54.87	18.02
TraesCS5A01G423800.1	Wheat	plasma membrane	54.87	18.02
Os03t0785500-01	Rice	plasma membrane	55.75	17.95
GSMUA_Achr7P01140_001	Banana	plasma membrane	54.87	17.92
Solyc08g023460.2.1	Tomato	plasma membrane	53.98	17.84
TraesCS5B01G426100.1	Wheat	plasma membrane	53.98	17.73
CDY51005	Canola	plastid	54.87	17.71
CDX81761	Canola	plastid	54.87	17.71
CDX79320	Canola	plasma membrane	52.21	17.3
CDX67994	Canola	plasma membrane	52.21	17.25
CDY10503	Canola	plastid	52.21	17.0
CDY42411	Canola	plastid	51.33	16.71
CDY08407	Canola	plasma membrane, plastid	50.44	16.62
CDY42174	Canola	plastid	50.44	16.29
HORVU5Hr1G103360.3	Barley	golgi	54.87	16.23
CDY00796	Canola	plastid	51.33	9.15
CDX73805	Canola	plastid	51.33	9.11
KRH12834	Soybean	plasma membrane	0.0	0.0

Protein Annotations

EnsemblPlants:CDX77634	EnsemblPlantsGene:GSBRNA2T00128563001	GO:A0A078CNP8	GO:GO:0005575	GO:GO:0016020	InterPro:CDC50/LEM3_fam
PANTHER:PTHR10926	PANTHER:PTHR10926:SF29	PFAM:PF03381	ProteinID:CDX77634	ProteinID:CDX77634.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0004EDBD36	MapMan:5.8.2.1.1.2	MapMan:24.1.2.4.1.2	:	:

Description

BnaC07g18880D

Coordinates

chrLK031812:-:250776..251297

Molecular Weight (calculated)

13116.1 Da

IEP (calculated)

10.529

GRAVY (calculated)

-0.116

Length

113 amino acids

Sequence
(BLAST)

001: MLYDTNFSRE RTKLKVSRND TAWKSDHEHK FRKNVFPFNF QNGTLISGPK LDPKISIIDQ EDFIVWMPMK LILSTSSWLG GRKDFLGITY LVVGASSIII
101: SIIFMLLHLK NPR

Best Arabidopsis Sequence Match ( AT5G46150.3 )
(BLAST)

001: MMEVEGSMNR APDQSSFLRS RRSKALYQFK QQKLPACKPV LTPISVITVF MLMGFVFIPI GLITLRASRD AIEIIDRYDV ECIPEEYRTN KLLYITDSSI
101: PKNCTRYLKV QKYMKAPIFI YYQLDNYYQN HRRYVKSRSD QQLLHGLEYS HTSSCEPEES SNGLPIVPCG LIAWSMFNDT FTFSRERTKL NVSRNNIAWK
201: SDREHKFGKN VYPINFQNGT LIGGAKLDPK IPLSDQEDFI VWMRAAALLS FRKLYGRIEE DLEPGKVVEV NLMNNYNTYS FSGQKKLILS TSNWLGGRND
301: FLGITYLVVG SSSIVISIIF MLLHLKNPR

Arabidopsis Description

ALIS2Putative ALA-interacting subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q67YS6]
SUBAcon: [peroxisome,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.