CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY24170
CDY36943

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54320.1	CDY24170	AT3G47620.1	21798944
AT1G54320.1	CDY36943	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10503	Canola	plastid	97.98	97.98
Bra030808.1-P	Field mustard	plastid	99.42	95.57
AT1G54320.1	Thale cress	plastid	91.93	91.4
CDY08407	Canola	plasma membrane, plastid	84.44	85.42
CDY42174	Canola	plastid	85.59	84.86
CDX67738	Canola	endoplasmic reticulum, extracellular, peroxisome	43.8	81.72
KRH43674	Soybean	plasma membrane, plastid	74.93	75.58
KRH13775	Soybean	plasma membrane, plastid	74.35	75.0
KRH13042	Soybean	plasma membrane	73.78	74.42
CDX79320	Canola	plasma membrane	72.33	73.61
CDX81761	Canola	plastid	74.06	73.43
CDY51005	Canola	plastid	73.78	73.14
CDX67994	Canola	plasma membrane	71.47	72.51
KRH44838	Soybean	plasma membrane, plastid	71.47	72.09
GSMUA_Achr6P20180_001	Banana	plastid	72.62	71.79
GSMUA_Achr11P...	Banana	plasma membrane, plastid	70.61	69.8
Os02t0173800-01	Rice	plasma membrane	70.32	69.71
Zm00001d015401_P001	Maize	plastid	70.03	69.63
Solyc05g054800.1.1	Tomato	nucleus	69.45	68.86
Zm00001d036654_P002	Maize	endoplasmic reticulum, golgi, plasma membrane, plastid	69.16	68.77
TraesCS6D01G145600.2	Wheat	plasma membrane, plastid	68.88	68.68
TraesCS6A01G155600.1	Wheat	plasma membrane, plastid	68.59	68.39
TraesCS6B01G183800.1	Wheat	plasma membrane, plastid	68.59	68.39
Zm00001d053778_P001	Maize	plasma membrane	68.59	68.19
EES06351	Sorghum	plastid	68.59	68.19
EER88783	Sorghum	plasma membrane, plastid	69.16	68.18
TraesCS7A01G482200.1	Wheat	plasma membrane	68.88	68.09
TraesCS7B01G384400.1	Wheat	plasma membrane	68.3	67.52
Os06t0665000-01	Rice	plasma membrane	69.45	67.32
TraesCS7D01G469100.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane, plastid	68.01	66.86
HORVU6Hr1G031530.3	Barley	plastid	65.71	64.77
VIT_19s0085g00850.t01	Wine grape	plastid	74.64	61.23
HORVU0Hr1G022300.1	Barley	endoplasmic reticulum	69.16	60.45
CDY35146	Canola	plasma membrane	54.47	55.26
CDY03242	Canola	golgi, peroxisome, plasma membrane, plastid	53.89	54.68
Zm00001d046948_P004	Maize	plasma membrane	65.13	53.81
CDX77634	Canola	golgi	16.71	51.33
CDY00796	Canola	plastid	85.59	46.85
CDX73805	Canola	plastid	85.88	46.78
PGSC0003DMT400060190	Potato	plasma membrane	71.18	41.44

Protein Annotations

EnsemblPlants:CDY42411	EnsemblPlantsGene:GSBRNA2T00074708001	GO:A0A078HXE2	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:CDC50/LEM3_fam	PANTHER:PTHR10926	PANTHER:PTHR10926:SF45	PFAM:PF03381	PIRSF:PIRSF015840	ProteinID:CDY42411
ProteinID:CDY42411.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0001BA8EC7	UniProt:A0A078HXE2	MapMan:5.8.2.1.1.2
MapMan:24.1.2.4.1.2	:	:	:	:	:

Description

BnaA08g00030DBnaA08g00030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HXE2]

Coordinates

chrLK032523:-:263030..265455

Molecular Weight (calculated)

38630.3 Da

IEP (calculated)

10.126

GRAVY (calculated)

-0.341

Length

347 amino acids

Sequence
(BLAST)

001: MSSNTASSSA GSGDSSAARK NSKRPKYSKF TQQELPACKP ILTPGWVIST FLIVSVIFIP LGVISLFASQ DVVEIVDRYD NDCIPAPART NKVAFIQGAA
101: PKSCNRTLTV TKRMKQPIYV YYQLENFYQN HRRYVKSRSD SQLRSPKFEN QISACKPEDD AGGKPIVPCG LIAWSLFNDT YTLSRNNTPL AVNKKGIAWK
201: SDKEHKFGNK VFPKNFQKGN LTGGATLNPD IPLSEQEDLI VWMRTAALPT FRKLYGKIET DLENGDTIQV TLQNNYNTYS FSGKKKLVLS TTSWLGGKND
301: FLGIAYLTVG GICFFLALAF TIMYLVKPRR LGDPSYLSWN RNPGGGR

Best Arabidopsis Sequence Match ( AT1G54320.1 )
(BLAST)

001: MSSNTASSSA GAAGSGDSSA ARKNSKRPKY SKFTQQELPA CKPILTPGWV ISTFLIVSVI FIPLGVISLF ASQDVVEIVD RYDTECIPAP ARTNKVAYIQ
101: GDGDKVCNRD LKVTKRMKQP IYVYYQLENF YQNHRRYVKS RSDSQLRSTK YENQISACKP EDDVGGQPIV PCGLIAWSLF NDTYALSRNN VSLAVNKKGI
201: AWKSDKEHKF GNKVFPKNFQ KGNITGGATL DPRIPLSEQE DLIVWMRTAA LPTFRKLYGK IESDLEMGDT IHVKLNNNYN TYSFNGKKKL VLSTTSWLGG
301: KNDFLGIAYL TVGGICFILA LAFTIMYLVK PRRLGDPSYL SWNRNPGGR

Arabidopsis Description

ALIS3ALA-interacting subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLK2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.