CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, plastid, plasma membrane

Predictor Summary:

plastid 2
mitochondrion 2
golgi 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35146	Canola	plasma membrane	98.54	98.54
AT5G46150.1	Thale cress	golgi, peroxisome, plasma membrane	91.23	90.96
CDX77634	Canola	golgi	25.73	77.88
VIT_10s0003g03980.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	65.5	67.67
KRH37801	Soybean	endoplasmic reticulum, golgi, plasma membrane, plastid	68.42	67.24
KRH12833	Soybean	cytosol	47.66	64.17
Solyc08g023460.2.1	Tomato	plasma membrane	63.16	63.16
GSMUA_Achr7P01140_001	Banana	plasma membrane	63.16	62.43
TraesCS5D01G432300.1	Wheat	plasma membrane	58.77	58.43
TraesCS5A01G423800.1	Wheat	plasma membrane	58.48	58.14
TraesCS5B01G426100.1	Wheat	plasma membrane	57.89	57.56
Os03t0785500-01	Rice	plasma membrane	58.77	57.27
Zm00001d034351_P001	Maize	plasma membrane	56.43	55.94
KXG37410	Sorghum	plasma membrane	55.56	55.07
CDX67738	Canola	endoplasmic reticulum, extracellular, peroxisome	29.82	54.84
CDX79320	Canola	plasma membrane	54.09	54.25
CDX67994	Canola	plasma membrane	54.09	54.09
CDY42411	Canola	plastid	54.68	53.89
CDY10503	Canola	plastid	54.68	53.89
CDY08407	Canola	plasma membrane, plastid	53.51	53.35
CDX81761	Canola	plastid	53.8	52.57
CDY51005	Canola	plastid	53.51	52.29
CDY42174	Canola	plastid	53.51	52.29
HORVU5Hr1G103360.3	Barley	golgi	57.89	51.83
KRH12834	Soybean	plasma membrane	13.74	47.0
CDY00796	Canola	plastid	53.8	29.02
CDX73805	Canola	plastid	53.51	28.73

Protein Annotations

EnsemblPlants:CDY03242	EnsemblPlantsGene:GSBRNA2T00115766001	GO:A0A078EQ99	GO:GO:0005575	GO:GO:0016020	InterPro:CDC50/LEM3_fam
PANTHER:PTHR10926	PANTHER:PTHR10926:SF29	PFAM:PF03381	PIRSF:PIRSF015840	ProteinID:CDY03242	ProteinID:CDY03242.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EDF829	MapMan:5.8.2.1.1.2	MapMan:24.1.2.4.1.2	:

Description

BnaC09g19140D

Coordinates

chrLK031941:+:1068273..1070233

Molecular Weight (calculated)

39209.2 Da

IEP (calculated)

9.504

GRAVY (calculated)

-0.249

Length

342 amino acids

Sequence
(BLAST)

001: MMEVEGSNTW MNRSPQSSFV RSKALYQFKQ QKLPACKPVL TPTSVITVFM LMGFVFIPIG FVTLRASRDA IEIVDRYDVE CIPEEYRTNK LSYITDSSIL
101: KNCTRYLKVQ KFMKAPIFIY YQLDNYYQNH RRYVKSRSDQ QLLHGQEYTH TSACEPEESS NGLPIVPCGL IAWSMFNDTF TFARESAKLK VSRSNIAWKS
201: DREHKFGKDV YPFNFQNGSL IGGAKLDPKV PLSDQEDFIV WMRAAALLSF RKLYGRIEED LEPGNVVVVN LMNNYNTYSF SGQKKLILST SSWLGGRNDF
301: LGLTYLVVGA SSIVISIIFM LLHLKNPRPY GDNSWNKKSL SS

Best Arabidopsis Sequence Match ( AT5G46150.2 )
(BLAST)

001: MMEVEGSMNR APDQSSFLRS RRSKALYQFK QQKLPACKPV LTPISVITVF MLMGFVFIPI GLITLRASRD AIEIIDRYDV ECIPEEYRTN KLLYITDSSI
101: PKNCTRYLKV QKYMKAPIFI YYQLDNYYQN HRRYVKSRSD QQLLHGLEYS HTSSCEPEES SNGLPIVPCG LIAWSMFNDT FTFSRERTKL NVSRNNIAWK
201: SDREHKFGKN VYPINFQNGT LIGGAKLDPK IPLSDQEDFI VWMRAAALLS FRKLYGRIEE DLEPGKVVEV NLMNNYNTYS FSGQKKLILS TSNWLGGRND
301: FLGITYLVVG SSSIVISIIF MLLHLKNPRP YGDNSWNKKS LSS

Arabidopsis Description

ALIS2Putative ALA-interacting subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q67YS6]
SUBAcon: [peroxisome,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.