Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, peroxisome
Predictor Summary:
Predictor Summary:
- plastid 1
- peroxisome 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G54320.1 | CDY24170 | AT3G47620.1 | 21798944 |
| AT1G54320.1 | CDY36943 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42411 | Canola | plastid | 81.72 | 43.8 |
| CDY10503 | Canola | plastid | 80.11 | 42.94 |
| CDX77634 | Canola | golgi | 25.27 | 41.59 |
| AT1G54320.1 | Thale cress | plastid | 76.34 | 40.69 |
| CDY08407 | Canola | plasma membrane, plastid | 70.97 | 38.48 |
| CDY42174 | Canola | plastid | 70.97 | 37.71 |
| KRH43674 | Soybean | plasma membrane, plastid | 68.28 | 36.92 |
| KRH13775 | Soybean | plasma membrane, plastid | 67.2 | 36.34 |
| CDX81761 | Canola | plastid | 66.67 | 35.43 |
| CDY51005 | Canola | plastid | 66.13 | 35.14 |
| KRH13042 | Soybean | plasma membrane | 64.52 | 34.88 |
| CDX79320 | Canola | plasma membrane | 62.9 | 34.31 |
| CDX67994 | Canola | plasma membrane | 62.37 | 33.92 |
| Zm00001d015401_P001 | Maize | plastid | 63.44 | 33.81 |
| KRH44838 | Soybean | plasma membrane, plastid | 62.37 | 33.72 |
| GSMUA_Achr6P20180_001 | Banana | plastid | 63.44 | 33.62 |
| Zm00001d036654_P002 | Maize | endoplasmic reticulum, golgi, plasma membrane, plastid | 62.9 | 33.52 |
| Zm00001d053778_P001 | Maize | plasma membrane | 62.9 | 33.52 |
| Solyc05g054800.1.1 | Tomato | nucleus | 62.37 | 33.14 |
| Os02t0173800-01 | Rice | plasma membrane | 61.83 | 32.86 |
| EER88783 | Sorghum | plasma membrane, plastid | 61.83 | 32.67 |
| GSMUA_Achr11P... | Banana | plasma membrane, plastid | 61.29 | 32.48 |
| TraesCS6B01G183800.1 | Wheat | plasma membrane, plastid | 60.75 | 32.47 |
| TraesCS6D01G145600.2 | Wheat | plasma membrane, plastid | 60.75 | 32.47 |
| EES06351 | Sorghum | plastid | 60.75 | 32.38 |
| TraesCS7A01G482200.1 | Wheat | plasma membrane | 60.75 | 32.19 |
| TraesCS6A01G155600.1 | Wheat | plasma membrane, plastid | 60.22 | 32.18 |
| Os06t0665000-01 | Rice | plasma membrane | 61.83 | 32.12 |
| TraesCS7D01G469100.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 60.75 | 32.01 |
| TraesCS7B01G384400.1 | Wheat | plasma membrane | 60.22 | 31.91 |
| HORVU6Hr1G031530.3 | Barley | plastid | 60.22 | 31.82 |
| CDY35146 | Canola | plasma membrane | 55.38 | 30.12 |
| CDY03242 | Canola | golgi, peroxisome, plasma membrane, plastid | 54.84 | 29.82 |
| VIT_19s0085g00850.t01 | Wine grape | plastid | 67.74 | 29.79 |
| HORVU0Hr1G022300.1 | Barley | endoplasmic reticulum | 61.83 | 28.97 |
| Zm00001d046948_P004 | Maize | plasma membrane | 62.37 | 27.62 |
| CDY00796 | Canola | plastid | 71.51 | 20.98 |
| CDX73805 | Canola | plastid | 71.51 | 20.88 |
| PGSC0003DMT400060190 | Potato | plasma membrane | 63.44 | 19.8 |
Protein Annotations
| EnsemblPlants:CDX67738 | EnsemblPlantsGene:GSBRNA2T00098925001 | GO:A0A078BXN4 | GO:GO:0005575 | GO:GO:0016020 | InterPro:CDC50/LEM3_fam |
| PANTHER:PTHR10926 | PANTHER:PTHR10926:SF28 | PFAM:PF03381 | ProteinID:CDX67738 | ProteinID:CDX67738.1 | UniParc:UPI0004EDEE98 |
| MapMan:5.8.2.1.1.2 | MapMan:24.1.2.4.1.2 | : | : | : | : |
Description
BnaA07g17780D
Coordinates
chrLK031787:-:2036226..2036948
Molecular Weight (calculated)
20742.1 Da
IEP (calculated)
10.160
GRAVY (calculated)
-0.315
Length
186 amino acids
Sequence
(BLAST)
(BLAST)
001: MLQLSQFTSG AFQITLSLGF TKLLKPEDDA TGGKPIVPCG LIAWSLFNGT YTLSRNNTPL AVNKKGIAWK SDKEHKFGNR VFPKNFQKGN RTGGATLNPD
101: IPLSEQEDLI VWMRTAALPT FRKLYGKIET DLENGDTIHV TVQNNYNTYS FSGKKKLVLL TTSWLGGKNN FLGIDEKLKL HLMGIY
101: IPLSEQEDLI VWMRTAALPT FRKLYGKIET DLENGDTIHV TVQNNYNTYS FSGKKKLVLL TTSWLGGKNN FLGIDEKLKL HLMGIY
001: MSTKKHNLLA NFASSDSRFT QQELPACKPI LTPKWVILTF LVSGVVFIPL GVICLFASQG VIEIVDRYDT DCIPLSSRDN KVRYIQGLED KRCNRTITVT
101: KTMKNPVYVY YQLENYYQNH RRYVKSRQDG QLRSPKDEHE TKSCAPEDTL GGQPIVPCGL VAWSLFNDTY DFTRNNQKLP VNKKDISWKS DRESKFGKNV
201: FPKNFQKGSL IGGKSLDQDI PLSEQEDLIV WMRTAALPTF RKLYGKIDTD LQAGDTIKVL LQNNYNTYSF NGKKKLVLST TSWLGGRNDF LGIAYLTVGS
301: ICLFLAVSFS VLYLAKPRQL GDPSYLSWNR SAGGGR
101: KTMKNPVYVY YQLENYYQNH RRYVKSRQDG QLRSPKDEHE TKSCAPEDTL GGQPIVPCGL VAWSLFNDTY DFTRNNQKLP VNKKDISWKS DRESKFGKNV
201: FPKNFQKGSL IGGKSLDQDI PLSEQEDLIV WMRTAALPTF RKLYGKIDTD LQAGDTIKVL LQNNYNTYSF NGKKKLVLST TSWLGGRNDF LGIAYLTVGS
301: ICLFLAVSFS VLYLAKPRQL GDPSYLSWNR SAGGGR
Arabidopsis Description
LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Source:TAIR;Acc:AT1G16360]
SUBAcon: [golgi]
SUBAcon: [golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.