CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
endoplasmic reticulum 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88112
EES07255

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54320.1	EER88112	AT3G47620.1	21798944
AT1G54320.1	EES07255	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015401_P001	Maize	plastid	91.69	91.69
TraesCS6B01G183800.1	Wheat	plasma membrane, plastid	80.8	81.03
TraesCS6D01G145600.2	Wheat	plasma membrane, plastid	80.52	80.75
TraesCS6A01G155600.1	Wheat	plasma membrane, plastid	79.94	80.17
Os02t0173800-01	Rice	plasma membrane	79.08	78.86
HORVU6Hr1G031530.3	Barley	plastid	78.8	78.12
EER88783	Sorghum	plasma membrane, plastid	77.08	76.42
GSMUA_Achr11P...	Banana	plasma membrane, plastid	73.07	72.65
GSMUA_Achr6P20180_001	Banana	plastid	70.77	70.37
CDY10503	Canola	plastid	68.77	69.16
CDY42411	Canola	plastid	68.19	68.59
KRH43674	Soybean	plasma membrane, plastid	67.34	68.31
AT1G54320.1	Thale cress	plastid	68.19	68.19
KRH44838	Soybean	plasma membrane, plastid	66.19	67.15
KRH13775	Soybean	plasma membrane, plastid	66.19	67.15
KRH13042	Soybean	plasma membrane	66.19	67.15
Solyc05g054800.1.1	Tomato	nucleus	66.19	66.0
CDY08407	Canola	plasma membrane, plastid	64.76	65.89
Bra034736.1-P	Field mustard	plasma membrane, plastid	64.47	65.6
Bra030808.1-P	Field mustard	plastid	67.62	65.37
Bra001467.1-P	Field mustard	plastid	65.33	65.33
AT3G12740.1	Thale cress	plastid	65.33	65.14
CDY42174	Canola	plastid	65.04	64.86
CDX79320	Canola	plasma membrane	61.6	63.05
AT1G16360.2	Thale cress	plastid	63.04	62.86
AT1G79450.1	Thale cress	plasma membrane	62.18	62.0
CDX81761	Canola	plastid	61.89	61.71
CDY51005	Canola	plastid	61.89	61.71
CDX67994	Canola	plasma membrane	60.46	61.7
Bra003610.1-P	Field mustard	plasma membrane	60.17	61.4
EES19858	Sorghum	plasma membrane	59.89	61.11
CDX67738	Canola	endoplasmic reticulum, extracellular, peroxisome	32.38	60.75
KXG40321	Sorghum	plasma membrane	58.17	60.06
VIT_19s0085g00850.t01	Wine grape	plastid	66.76	55.08
EER97184	Sorghum	plasma membrane	55.3	53.76
KXG37410	Sorghum	plasma membrane	51.0	51.59
KXG36190	Sorghum	plastid	44.41	51.32
PGSC0003DMT400060190	Potato	plasma membrane	68.77	40.27
CDY00796	Canola	plastid	66.19	36.44
CDX73805	Canola	plastid	65.33	35.79
Bra026722.1-P	Field mustard	cytosol, golgi, plasma membrane	61.03	31.28

Protein Annotations

EnsemblPlants:EES06351	EnsemblPlantsGene:SORBI_3004G058500	EntrezGene:8077191	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:CDC50/LEM3_fam	PANTHER:PTHR10926	PANTHER:PTHR10926:SF30	PFAM:PF03381	PIRSF:PIRSF015840	ProteinID:EES06351
ProteinID:EES06351.1	RefSeq:XP_002453375.1	SEG:seg	TMHMM:TMhelix	unigene:Sbi.16613	UniParc:UPI0001A85AD6
UniProt:C5XW62	MapMan:5.8.2.1.1.2	MapMan:24.1.2.4.1.2	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:4679981..4683129

Molecular Weight (calculated)

39274.0 Da

IEP (calculated)

9.782

GRAVY (calculated)

-0.323

Length

349 amino acids

Sequence
(BLAST)

001: MDSHAAGSSS GGSGDGAAQA RRNSRKPKYS KFTQQELPAC KPILTPKWVI SVFVLVGVIF VPIGIVSLRS SRQVVEIVDR YDDACVPAGV TDKLAYIRNE
101: SIPKACTRNL TITKDMKQPI FVYYQLDDFY QNHRRYVKSR NDVQLRDKSK ASETSNCDPE AKTVDGKPIV PCGLIAWSLF NDTYNLIHNN VTLRVDKNDI
201: SWKSDRDHKF GSDVFPTNFQ EGPLKGGKTL DSSIPLSKQE DLIVWMRTAA LPTFRKLYGR IYVDLKENDT ITVQLENNYN TYSFSGKKKL VLSTATWIGG
301: KNDFLGLAYL TVGGICFFLA FAFTLLYLIK PRKMGDNSYL SWNRATLGR

Best Arabidopsis Sequence Match ( AT1G54320.1 )
(BLAST)

001: MSSNTASSSA GAAGSGDSSA ARKNSKRPKY SKFTQQELPA CKPILTPGWV ISTFLIVSVI FIPLGVISLF ASQDVVEIVD RYDTECIPAP ARTNKVAYIQ
101: GDGDKVCNRD LKVTKRMKQP IYVYYQLENF YQNHRRYVKS RSDSQLRSTK YENQISACKP EDDVGGQPIV PCGLIAWSLF NDTYALSRNN VSLAVNKKGI
201: AWKSDKEHKF GNKVFPKNFQ KGNITGGATL DPRIPLSEQE DLIVWMRTAA LPTFRKLYGK IESDLEMGDT IHVKLNNNYN TYSFNGKKKL VLSTTSWLGG
301: KNDFLGIAYL TVGGICFILA LAFTIMYLVK PRRLGDPSYL SWNRNPGGR

Arabidopsis Description

ALIS3ALA-interacting subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLK2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.