Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER97184 | Sorghum | plasma membrane | 68.21 | 57.38 |
| EER88783 | Sorghum | plasma membrane, plastid | 53.97 | 46.31 |
| EES06351 | Sorghum | plastid | 51.32 | 44.41 |
| KXG40321 | Sorghum | plasma membrane | 49.34 | 44.08 |
| EES19858 | Sorghum | plasma membrane | 47.35 | 41.81 |
| KXG37410 | Sorghum | plasma membrane | 47.02 | 41.16 |
Protein Annotations
| EnsemblPlants:KXG36190 | EnsemblPlantsGene:SORBI_3002G296800 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:CDC50/LEM3_fam |
| PANTHER:PTHR10926 | PANTHER:PTHR10926:SF27 | PFAM:PF03381 | PIRSF:PIRSF015840 | ProteinID:KXG36190 | ProteinID:KXG36190.2 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0009DC82D3 | UniProt:A0A1B6QE51 | MapMan:5.8.2.1.1.2 | MapMan:24.1.2.4.1.2 |
Description
hypothetical protein
Coordinates
chr2:+:67338433..67340417
Molecular Weight (calculated)
32832.6 Da
IEP (calculated)
10.033
GRAVY (calculated)
-0.182
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPMNVDAAV PSSSQQAGLA ATTNKRNRPR CLACMAASNK VVEVVDQYET ACIPEKMRDN KVAYIQNPST DKSCPRLLKV HAHMKAPIYV YYKLDKFDQN
101: HRRYARSRSI SQLGSPKMAK DTKTCSPEAT AKGGGPIVPC GLVAWSLFND TYGFARRNET LAVNRQGISW RSDRGHLFGD RVYPRNFQAG ALVGGGTLDP
201: NKSEDLMVWM RTAALPAFRK LYGRIEVDLH AGDEVAVTVQ NNYNTYSFGG KKALVLSTAG VLGGKSSFLG RAYLAGGIAC LALALLLTLL FLLPVPAHAS
301: SS
101: HRRYARSRSI SQLGSPKMAK DTKTCSPEAT AKGGGPIVPC GLVAWSLFND TYGFARRNET LAVNRQGISW RSDRGHLFGD RVYPRNFQAG ALVGGGTLDP
201: NKSEDLMVWM RTAALPAFRK LYGRIEVDLH AGDEVAVTVQ NNYNTYSFGG KKALVLSTAG VLGGKSSFLG RAYLAGGIAC LALALLLTLL FLLPVPAHAS
301: SS
001: MSTKKHNLLA NFASSDSRFT QQELPACKPI LTPKWVILTF LVSGVVFIPL GVICLFASQG VIEIVDRYDT DCIPLSSRDN KVRYIQGLED KRCNRTITVT
101: KTMKNPVYVY YQLENYYQNH RRYVKSRQDG QLRSPKDEHE TKSCAPEDTL GGQPIVPCGL VAWSLFNDTY DFTRNNQKLP VNKKDISWKS DRESKFGKNV
201: FPKNFQKGSL IGGKSLDQDI PLSEQEDLIV WMRTAALPTF RKLYGKIDTD LQAGDTIKVL LQNNYNTYSF NGKKKLVLST TSWLGGRNDF LGIAYLTVGS
301: ICLFLAVSFS VLYLAKPRQL GDPSYLSWNR SAGGGR
101: KTMKNPVYVY YQLENYYQNH RRYVKSRQDG QLRSPKDEHE TKSCAPEDTL GGQPIVPCGL VAWSLFNDTY DFTRNNQKLP VNKKDISWKS DRESKFGKNV
201: FPKNFQKGSL IGGKSLDQDI PLSEQEDLIV WMRTAALPTF RKLYGKIDTD LQAGDTIKVL LQNNYNTYSF NGKKKLVLST TSWLGGRNDF LGIAYLTVGS
301: ICLFLAVSFS VLYLAKPRQL GDPSYLSWNR SAGGGR
Arabidopsis Description
LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Source:TAIR;Acc:AT1G16360]
SUBAcon: [golgi]
SUBAcon: [golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.