CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 1
peroxisome 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021371_P001	Maize	plasma membrane	87.19	81.3
Os09t0560600-01	Rice	plasma membrane	70.47	72.08
KXG36190	Sorghum	plastid	57.38	68.21
TraesCS5D01G390300.2	Wheat	plasma membrane, plastid	65.46	65.28
TraesCS5A01G380500.1	Wheat	plasma membrane	63.79	63.79
TraesCS5B01G384100.1	Wheat	plasma membrane	62.95	61.08
HORVU5Hr1G094000.6	Barley	plasma membrane, plastid	64.35	60.79
EER88783	Sorghum	plasma membrane, plastid	55.15	56.25
EES06351	Sorghum	plastid	53.76	55.3
KXG40321	Sorghum	plasma membrane	50.7	53.85
EES19858	Sorghum	plasma membrane	50.42	52.92
KXG37410	Sorghum	plasma membrane	46.24	48.12
Os09t0560700-01	Rice	cytosol, peroxisome, plastid	2.51	2.78

Protein Annotations

EnsemblPlants:EER97184	EnsemblPlantsGene:SORBI_3002G296600	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:CDC50/LEM3_fam
PANTHER:PTHR10926	PANTHER:PTHR10926:SF27	PFAM:PF03381	PIRSF:PIRSF015840	ProteinID:EER97184	ProteinID:EER97184.1
RefSeq:XP_002460663.1	SEG:seg	TMHMM:TMhelix	unigene:Sbi.20142	UniParc:UPI0001A83AD9	UniProt:C5X8E1
MapMan:5.8.2.1.1.2	MapMan:24.1.2.4.1.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:67332662..67335378

Molecular Weight (calculated)

40178.1 Da

IEP (calculated)

9.989

GRAVY (calculated)

-0.136

Length

359 amino acids

Sequence
(BLAST)

001: MDALSSPGTA MVPVNGDTAG PSSSQDDSAV TTKKRNRPQY HPFTQQQLPA CKPILAPQTV IPVLLFVGIV FILIGLGCIA ASNRVVEVVY QYETSCIPRY
101: MLDNKVAYIQ NPSIDKTCTR ILKVPKDMKH PIYIYYQLDN FYQNHRRYVT SRNDKQLINP KEANNTQYCK PEATEHGSPV VPCGLIAWSL FNDTYSFARG
201: NKALRVHKRG ISWRSEREHL FGKQVFPRNF QKGALIGGGT LDPRIPLSKQ EDLIVWMRTA ALPTFRKLYG RIQVDLRAGE LITVTMQNNY NTYSFGGKKA
301: VVLSTAGVLG GKNSFLGRGY VIVGLACLLL ALLLTMLCLV FPLKEEHLAL QYPLPRPAR

Best Arabidopsis Sequence Match ( AT1G16360.2 )
(BLAST)

001: MSFSATSSIA LGGGSAEASA AKNTSKRPKY SRFTQQELPA CKPILTPKWV ILTFLVSGVV FIPLGVICLF ASQGVIEIVD RYDTDCIPLS SRDNKVRYIQ
101: GLEDKRCNRT ITVTKTMKNP VYVYYQLENY YQNHRRYVKS RQDGQLRSPK DEHETKSCAP EDTLGGQPIV PCGLVAWSLF NDTYDFTRNN QKLPVNKKDI
201: SWKSDRESKF GKNVFPKNFQ KGSLIGGKSL DQDIPLSEQE DLIVWMRTAA LPTFRKLYGK IDTDLQAGDT IKVLLQNNYN TYSFNGKKKL VLSTTSWLGG
301: RNDFLGIAYL TVGSICLFLA VSFSVLYLAK PRQLGDPSYL SWNRSAGGGR

Arabidopsis Description

LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Source:TAIR;Acc:AT1G16360]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.