Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 3
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G380500.1 | Wheat | plasma membrane | 91.89 | 94.71 |
| TraesCS5D01G390300.2 | Wheat | plasma membrane, plastid | 91.35 | 93.89 |
| HORVU5Hr1G094000.6 | Barley | plasma membrane, plastid | 86.76 | 84.47 |
| Os09t0560600-01 | Rice | plasma membrane | 60.81 | 64.1 |
| EER97184 | Sorghum | plasma membrane | 61.08 | 62.95 |
| Zm00001d021371_P001 | Maize | plasma membrane | 61.89 | 59.48 |
| TraesCS7B01G384400.1 | Wheat | plasma membrane | 48.11 | 50.71 |
| TraesCS6B01G183800.1 | Wheat | plasma membrane, plastid | 46.76 | 49.71 |
| TraesCS4B01G350400.1 | Wheat | plasma membrane | 43.51 | 48.35 |
| TraesCS5B01G426100.1 | Wheat | plasma membrane | 43.24 | 46.51 |
| TraesCS1B01G364300.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 42.7 | 46.47 |
| Os09t0560700-01 | Rice | cytosol, peroxisome, plastid | 1.35 | 1.54 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G384100.1 | EnsemblPlantsGene:TraesCS5B01G384100 | GO:GO:0005575 | GO:GO:0016020 | InterPro:CDC50/LEM3_fam | PANTHER:PTHR10926 |
| PANTHER:PTHR10926:SF27 | PFAM:PF03381 | PIRSF:PIRSF015840 | SEG:seg | TMHMM:TMhelix | MapMan:5.8.2.1.1.2 |
| MapMan:24.1.2.4.1.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5B:-:562964936..562967266
Molecular Weight (calculated)
40377.2 Da
IEP (calculated)
10.207
GRAVY (calculated)
-0.078
Length
370 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPANGGAAA GPSSGSGRDG PPAATAAVKR NRPRYHAFTQ QQLPACKPIL SPNMVIPILV FVGLLFIPIG LACYAASNKV FEVVYRYDTK CVPKNMLHNK
101: VGYIQNASIN KTCTINLKIP NAMKRPIFVY YQLDRFYQNH RRYATSFNIA QLSDPKEEAN ADIKDCKPEA YAGKGIPVVP CGLVAWSLFN DTYSLARRPR
201: RAGGIGGVEA LRVIKSGISW RSERERLFGK HVYPKNFQNG SLVGGGRLDP RKPLSEQEEL MVWMRTAAMP RFRKLYGRVE ADLDAGETVA VEVRNSYNTY
301: SFDGGKAVVL STAGPLGGRK AFLGRAYLVT GMACLVLALL LTLVCLFFPI GASPAAVAIE SSIHGSCRRA
101: VGYIQNASIN KTCTINLKIP NAMKRPIFVY YQLDRFYQNH RRYATSFNIA QLSDPKEEAN ADIKDCKPEA YAGKGIPVVP CGLVAWSLFN DTYSLARRPR
201: RAGGIGGVEA LRVIKSGISW RSERERLFGK HVYPKNFQNG SLVGGGRLDP RKPLSEQEEL MVWMRTAAMP RFRKLYGRVE ADLDAGETVA VEVRNSYNTY
301: SFDGGKAVVL STAGPLGGRK AFLGRAYLVT GMACLVLALL LTLVCLFFPI GASPAAVAIE SSIHGSCRRA
001: MSTKKHNLLA NFASSDSRFT QQELPACKPI LTPKWVILTF LVSGVVFIPL GVICLFASQG VIEIVDRYDT DCIPLSSRDN KVRYIQGLED KRCNRTITVT
101: KTMKNPVYVY YQLENYYQNH RRYVKSRQDG QLRSPKDEHE TKSCAPEDTL GGQPIVPCGL VAWSLFNDTY DFTRNNQKLP VNKKDISWKS DRESKFGKNV
201: FPKNFQKGSL IGGKSLDQDI PLSEQEDLIV WMRTAALPTF RKLYGKIDTD LQAGDTIKVL LQNNYNTYSF NGKKKLVLST TSWLGGRNDF LGIAYLTVGS
301: ICLFLAVSFS VLYLAKPRQL GDPSYLSWNR SAGGGR
101: KTMKNPVYVY YQLENYYQNH RRYVKSRQDG QLRSPKDEHE TKSCAPEDTL GGQPIVPCGL VAWSLFNDTY DFTRNNQKLP VNKKDISWKS DRESKFGKNV
201: FPKNFQKGSL IGGKSLDQDI PLSEQEDLIV WMRTAALPTF RKLYGKIDTD LQAGDTIKVL LQNNYNTYSF NGKKKLVLST TSWLGGRNDF LGIAYLTVGS
301: ICLFLAVSFS VLYLAKPRQL GDPSYLSWNR SAGGGR
Arabidopsis Description
LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Source:TAIR;Acc:AT1G16360]
SUBAcon: [golgi]
SUBAcon: [golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.