Factsheet for TraesCS4B01G350400.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

golgi 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	golgi, plasma membrane
MultiLoc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G345100.1	Wheat	plasma membrane	98.5	98.5
TraesCS5A01G519200.1	Wheat	plasma membrane	98.5	97.91
HORVU4Hr1G085300.1	Barley	golgi	32.43	84.38
HORVU5Hr1G020720.6	Barley	cytosol	57.66	83.12
Os03t0120100-01	Rice	plasma membrane	77.78	76.18
Zm00001d027401_P001	Maize	plasma membrane	75.68	74.12
KXG40321	Sorghum	plasma membrane	73.87	72.78
TraesCS1B01G364300.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	67.57	66.18
VIT_00s2279g00010.t01	Wine grape	cytosol	46.25	64.44
GSMUA_Achr4P29460_001	Banana	plasma membrane	67.27	64.37
VIT_00s1667g00010.t01	Wine grape	plasma membrane	59.46	64.29
GSMUA_Achr2P11380_001	Banana	plasma membrane	65.77	63.48
TraesCS6B01G183800.1	Wheat	plasma membrane, plastid	62.16	59.48
TraesCS7B01G384400.1	Wheat	plasma membrane	60.96	57.83
KRH09908	Soybean	plasma membrane	57.66	55.81
KRG94866	Soybean	plasma membrane	58.26	55.59
PGSC0003DMT400055262	Potato	plasma membrane	57.36	55.52
Solyc02g036440.2.1	Tomato	plasma membrane	57.36	55.52
TraesCS5B01G426100.1	Wheat	plasma membrane	51.65	50.0
KRH23423	Soybean	plasma membrane	53.45	46.72
VIT_16s0115g00160.t01	Wine grape	cytosol	29.13	45.75
KRH06673	Soybean	endoplasmic reticulum, golgi, plasma membrane	46.85	44.07
TraesCS5B01G384100.1	Wheat	plasma membrane	48.35	43.51

Protein Annotations

EnsemblPlants:TraesCS4B01G350400.1	EnsemblPlantsGene:TraesCS4B01G350400	GO:GO:0005575	GO:GO:0016020	InterPro:CDC50/LEM3_fam	PANTHER:PTHR10926
PANTHER:PTHR10926:SF26	PFAM:PF03381	PIRSF:PIRSF015840	TMHMM:TMhelix	MapMan:5.8.2.1.1.2	MapMan:24.1.2.4.1.2

Description

No Description!

Coordinates

chr4B:+:643281972..643284287

Molecular Weight (calculated)

37269.9 Da

IEP (calculated)

9.737

GRAVY (calculated)

-0.198

Length

333 amino acids

Sequence
(BLAST)

001: MYPLEMEGNS NPKTTNKPKY SKFTQQELPA CKPLLTPEIV IAAFALIGAL FVPIGLASLH ASRQVVELVH RYDASCVPVD DKVGFIQNSR TDKTCTITMT
101: VPKYMKSPIH VHYLIDGFYQ NHRRYVRSRS DKQLRYKSAA HLTSDCVPEG DTADHAPIVP CGLVAWSLFN DTYTVRVNGV VTQVNKKDIA WKSDKNNKFG
201: KNIYPSNFQK GRLIGGATLN ESIPLSEQED LIVWMRTAAL PTFRKLYGRI EKDINANDNV TVVIQNNYNT YSFGGSKALV LSTASWIGGK NNFIGFAYLT
301: IGGLCLSLAM GFLVLYIVKR RNFADPSNLS WNR

Best Arabidopsis Sequence Match ( AT1G16360.1 )
(BLAST)

001: MSTKKHNLLA NFASSDSRFT QQELPACKPI LTPKWVILTF LVSGVVFIPL GVICLFASQG VIEIVDRYDT DCIPLSSRDN KVRYIQGLED KRCNRTITVT
101: KTMKNPVYVY YQLENYYQNH RRYVKSRQDG QLRSPKDEHE TKSCAPEDTL GGQPIVPCGL VAWSLFNDTY DFTRNNQKLP VNKKDISWKS DRESKFGKNV
201: FPKNFQKGSL IGGKSLDQDI PLSEQEDLIV WMRTAALPTF RKLYGKIDTD LQAGDTIKVL LQNNYNTYSF NGKKKLVLST TSWLGGRNDF LGIAYLTVGS
301: ICLFLAVSFS VLYLAKPRQL GDPSYLSWNR SAGGGR

Arabidopsis Description

LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Source:TAIR;Acc:AT1G16360]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.