Factsheet for VIT_16s0115g00160.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s2279g00010.t01	Wine grape	cytosol	53.3	47.28
HORVU4Hr1G085300.1	Barley	golgi	27.83	46.09
VIT_00s1667g00010.t01	Wine grape	plasma membrane	64.62	44.48
GSMUA_Achr4P29460_001	Banana	plasma membrane	58.96	35.92
GSMUA_Achr2P11380_001	Banana	plasma membrane	56.6	34.78
PGSC0003DMT400055262	Potato	plasma membrane	52.36	32.27
Solyc02g036440.2.1	Tomato	plasma membrane	52.36	32.27
KRH09908	Soybean	plasma membrane	51.42	31.69
Zm00001d038750_P006	Maize	plasma membrane	50.47	31.56
Os03t0120100-01	Rice	plasma membrane	49.53	30.88
EES19858	Sorghum	plasma membrane	49.53	30.7
Zm00001d027401_P001	Maize	plasma membrane	49.06	30.59
TraesCS4D01G345100.1	Wheat	plasma membrane	46.7	29.73
KRG94866	Soybean	plasma membrane	48.11	29.23
TraesCS4B01G350400.1	Wheat	plasma membrane	45.75	29.13
KXG40321	Sorghum	plasma membrane	46.23	28.99
TraesCS5A01G519200.1	Wheat	plasma membrane	45.75	28.96
TraesCS1B01G364300.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	44.81	27.94
TraesCS1D01G352700.1	Wheat	plasma membrane	44.81	27.94
TraesCS1A01G350000.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	45.28	27.51
VIT_10s0003g03980.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	41.98	26.89
KRH06673	Soybean	endoplasmic reticulum, golgi, plasma membrane	44.81	26.84
Os05t0529900-00	Rice	plasma membrane	42.92	26.45
KRH23423	Soybean	plasma membrane	46.7	25.98
VIT_19s0085g00850.t01	Wine grape	plastid	51.42	25.77
HORVU5Hr1G020720.6	Barley	cytosol	25.47	23.38
HORVU1Hr1G081400.10	Barley	cytosol, endoplasmic reticulum	27.83	17.0
HORVU6Hr1G093390.1	Barley	cytosol, endoplasmic reticulum	28.3	16.39

Protein Annotations

ArrayExpress:VIT_16s0115g00160	EMBL:FN595518	EnsemblPlants:VIT_16s0115g00160.t01	EnsemblPlantsGene:VIT_16s0115g00160	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:CDC50/LEM3_fam	PANTHER:PTHR10926	PANTHER:PTHR10926:SF28	PFAM:PF03381	ProteinID:CCB49978
ProteinID:CCB49978.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI00021092B5	UniProt:F6HCN3	MapMan:5.8.2.1.1.2
MapMan:24.1.2.4.1.2	:	:	:	:	:

Description

No Description!

Coordinates

chr16:-:3713214..3719756

Molecular Weight (calculated)

24109.8 Da

IEP (calculated)

9.172

GRAVY (calculated)

-0.267

Length

212 amino acids

Sequence
(BLAST)

001: MDPNGGSSSA GAADGASDPA AARRRHSKKP KCHFIIHLCW HYLHPYWSCF LVCIRTCGRN CTRYDTDCVP ASYRNDMLAY IQSNETNKTC TRTFLVPKQM
101: KSPVYIYYQL DNFYQNHRRI PVDLEANTEL TVVIENNYNT YSFGGKKKLV LSTTSWIGGK NDFLGIAYIT LGGLSLFLAI SFLLIYIIKP RPLGDPTFLS
201: WNRNPAGHFN FN

Best Arabidopsis Sequence Match ( AT3G12740.1 )
(BLAST)

001: MSSSNTPSSS AAAAGSIDSS AARRNSKRPK YSKFTQQELP ACKPILTPGW VISTFLIISV IFIPLGVISL FASQDVVEIV DRYDSACIPL SDRANKVAYI
101: QGTGNKSCTR TLIVPKRMKQ PIYVYYQLEN FYQNHRRYVK SRSDSQLRSV KDENQIDACK PEDDFGGQPI VPCGLIAWSL FNDTYVLSRN NQGLTVNKKG
201: IAWKSDKEHK FGKNVFPKNF QKGNLTGGAS LDPNKPLSDQ EDLIVWMRTA ALPTFRKLYG KIESDLEKGE NIQVTLQNNY NTYSFSGKKK LVLSTTSWLG
301: GKNDFLGIAY LTVGGICFVL ALAFTVMYLV KPRRLGDPTY LSWNRIPGGR

Arabidopsis Description

ALIS1ALA-interacting subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTW0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.