Factsheet for VIT_10s0003g03980.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane

Predictor Summary:

nucleus 1
golgi 1
plasma membrane 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH37801	Soybean	endoplasmic reticulum, golgi, plasma membrane, plastid	75.83	72.13
KRH12833	Soybean	cytosol	54.38	70.87
GSMUA_Achr7P01140_001	Banana	plasma membrane	71.0	67.92
Solyc08g023460.2.1	Tomato	plasma membrane	68.88	66.67
AT5G46150.1	Thale cress	golgi, peroxisome, plasma membrane	68.58	66.18
CDY35146	Canola	plasma membrane	68.28	66.08
Bra017577.1-P	Field mustard	plasma membrane	67.98	65.79
CDY03242	Canola	golgi, peroxisome, plasma membrane, plastid	67.67	65.5
TraesCS5D01G432300.1	Wheat	plasma membrane	67.07	64.53
TraesCS5A01G423800.1	Wheat	plasma membrane	67.07	64.53
TraesCS5B01G426100.1	Wheat	plasma membrane	66.47	63.95
CDX77634	Canola	golgi	21.75	63.72
Os03t0785500-01	Rice	plasma membrane	65.86	62.11
KXG37410	Sorghum	plasma membrane	64.65	62.03
VIT_00s1667g00010.t01	Wine grape	plasma membrane	57.7	62.01
VIT_00s2279g00010.t01	Wine grape	cytosol	44.71	61.92
Zm00001d034351_P001	Maize	plasma membrane	64.05	61.45
KRH12834	Soybean	plasma membrane	17.52	58.0
HORVU5Hr1G103360.3	Barley	golgi	66.47	57.59
VIT_19s0085g00850.t01	Wine grape	plastid	61.33	47.99
VIT_16s0115g00160.t01	Wine grape	cytosol	26.89	41.98

Protein Annotations

EntrezGene:100241169	wikigene:100241169	MapMan:24.1.2.4.1.2	MapMan:5.8.2.1.1.2	ProteinID:CBI30937	ProteinID:CBI30937.3
InterPro:CDC50/LEM3_fam	UniProt:D7TKB5	EMBL:FN595992	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
EntrezGene:LOC100241169	wikigene:LOC100241169	PFAM:PF03381	PIRSF:PIRSF015840	PANTHER:PTHR10926	PANTHER:PTHR10926:SF29
TMHMM:TMhelix	UniParc:UPI00019842D1	ArrayExpress:VIT_10s0003g03980	EnsemblPlantsGene:VIT_10s0003g03980	EnsemblPlants:VIT_10s0003g03980.t01	RefSeq:XP_002271780
RefSeq:XP_002271780.1	RefSeq:XP_010655690.1	SEG:seg	:	:	:

Description

ALA-interacting subunit [Source:UniProtKB/TrEMBL;Acc:D7TKB5]

Coordinates

chr10:+:6739876..6748016

Molecular Weight (calculated)

37403.0 Da

IEP (calculated)

9.454

GRAVY (calculated)

-0.229

Length

331 amino acids

Sequence
(BLAST)

001: MDADGGSASA VGIEGRPVSL HSGQPRALYQ FTQQSLPACK PVLTPGWVIA TFLLIGAIFI PVGLVSLHAS QNVVEIVERY DAECIPEKYQ SNKVAYIRDS
101: SIPKNCTRYL KVHKHMKAPI SVYYQLDNFY QNHRRYVKSR SDQQLLHGLK YNDTSSCKPE QLNNGLPIVP CGLIAWSLFN DTFNFVRRSE EMKINRKNIA
201: WKSDRDHKFG KEVYPFNFQN GTLIGGGKLD PRIPLSDQED LIVWMRTAAL PSFRKLYGRI EEDIDADDVI VVHLSNNYNT YSFGGKKKLV LSTSSWLGGK
301: NNFLGIAYIF VGSSCIFTSI VFMLLHVKNP R

Best Arabidopsis Sequence Match ( AT5G46150.3 )
(BLAST)

001: MMEVEGSMNR APDQSSFLRS RRSKALYQFK QQKLPACKPV LTPISVITVF MLMGFVFIPI GLITLRASRD AIEIIDRYDV ECIPEEYRTN KLLYITDSSI
101: PKNCTRYLKV QKYMKAPIFI YYQLDNYYQN HRRYVKSRSD QQLLHGLEYS HTSSCEPEES SNGLPIVPCG LIAWSMFNDT FTFSRERTKL NVSRNNIAWK
201: SDREHKFGKN VYPINFQNGT LIGGAKLDPK IPLSDQEDFI VWMRAAALLS FRKLYGRIEE DLEPGKVVEV NLMNNYNTYS FSGQKKLILS TSNWLGGRND
301: FLGITYLVVG SSSIVISIIF MLLHLKNPR

Arabidopsis Description

ALIS2Putative ALA-interacting subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q67YS6]
SUBAcon: [peroxisome,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.